Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0161
(410 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 5e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 2e-15
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 69 1e-12
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 58 4e-09
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.092
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.16
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 0.85
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 0.85
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 1.5
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 2.0
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 29 2.0
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 2.6
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 3.4
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 6.0
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 6.0
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 7.9
SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028) 27 7.9
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 27 7.9
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 5e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 188
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 2e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 364
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +3
Query: 186 MGKGSFKYAWVLDKLKAERERGI 254
MGKGSFKYAWVLDKLKAERERGI
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGI 23
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 69.3 bits (162), Expect = 1e-12
Identities = 29/51 (56%), Positives = 40/51 (78%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEF
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEF 51
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 57.6 bits (133), Expect = 4e-09
Identities = 22/51 (43%), Positives = 36/51 (70%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEF
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEF 260
Score = 46.4 bits (105), Expect = 9e-06
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +3
Query: 126 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG 251
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 33.1 bits (72), Expect = 0.092
Identities = 24/63 (38%), Positives = 29/63 (46%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 246 RGI 254
RGI
Sbjct: 1987 RGI 1989
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.16
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 30.3 bits (65), Expect = 0.65
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 0.85
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 0.85
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
Score = 26.6 bits (56), Expect = 7.9
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 75 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 254
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 57 THINIVVIGHVDSGKSTTTGHLIY 128
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + + +F D T N T V +++
Sbjct: 1030 RTASTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 281 RTSREQYRLDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 111
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 209 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTPVPSISA 265
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 308 IDAPGHRDFIKNMITGTSQADCAVLIVA 391
+D PGH + M+ G + D A+L++A
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIA 96
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +2
Query: 263 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 394
I + + + +D PGH F G D +++VAA
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 39 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 212
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTTGHLIY 128
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 159 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+++ K +EM + K W +KLKAE E
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70
>SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)
Length = 616
Score = 26.6 bits (56), Expect = 7.9
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -2
Query: 337 DEISVSRSINDGNIVLASFELPESNIDWIPRSRSAFSLSNTQ-AYLKDPLPISWASFSNF 161
D S S S N ++ + + +NID + R + S SN A + P P NF
Sbjct: 334 DNFSNSPSSNRNSLYIRN-TTNSNNIDNLTRQMGSSSESNNLVAQNRSPFPHPVKKAPNF 392
Query: 160 SMVRLSIPPH 131
S++ +P H
Sbjct: 393 SVIEKIVPGH 402
>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
Length = 280
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 12 HAFVIRD*P--KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT 155
H F I D +M KEK IV+ G SGK+ +T +++ + ++T
Sbjct: 214 HIFAIADVAFYRMLKEKKSQCIVISGESGSGKTESTKLIVHHLTALSRKT 263
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,852
Number of Sequences: 59808
Number of extensions: 240300
Number of successful extensions: 632
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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