Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0161
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 152 1e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 1e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 152 1e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 152 1e-37
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 1e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 89 2e-18
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 89 2e-18
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 82 1e-16
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 54 5e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 54 5e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 54 5e-08
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 51 4e-07
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 51 4e-07
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.015
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 34 0.035
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.061
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.061
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.081
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.11
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.11
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.14
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.33
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.33
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.43
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 0.75
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 0.99
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 0.99
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical pr... 26 9.2
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 9.2
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 9.2
AF026214-6|AAB71316.3| 875|Caenorhabditis elegans Hypothetical ... 26 9.2
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 152 bits (368), Expect = 1e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 107 bits (257), Expect = 3e-24
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEF
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEF 123
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (368), Expect = 1e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 96.3 bits (229), Expect = 8e-21
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 391
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 152 bits (368), Expect = 1e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 107 bits (257), Expect = 3e-24
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEF
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEF 123
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 152 bits (368), Expect = 1e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 107 bits (257), Expect = 3e-24
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEF
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEF 123
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 1e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAER 242
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 231 KAERERGI 254
+ ERERG+
Sbjct: 227 EEERERGV 234
Score = 71.7 bits (168), Expect = 2e-13
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 88.6 bits (210), Expect = 2e-18
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 231 KAERERGI 254
+ ERERG+
Sbjct: 245 EEERERGV 252
Score = 71.7 bits (168), Expect = 2e-13
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 82.2 bits (194), Expect = 1e-16
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +3
Query: 45 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 224
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 225 KLKAERERG 251
ERE+G
Sbjct: 164 TNDEEREKG 172
Score = 62.9 bits (146), Expect = 9e-11
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEF
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEF 225
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 53.6 bits (123), Expect = 5e-08
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 148
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 53.6 bits (123), Expect = 5e-08
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 53.6 bits (123), Expect = 5e-08
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 106 LEYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 50.8 bits (116), Expect = 4e-07
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDG 144
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTT 113
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 50.8 bits (116), Expect = 4e-07
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDG 144
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTT 113
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.5 bits (78), Expect = 0.015
Identities = 27/63 (42%), Positives = 32/63 (50%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 246 RGI 254
RGI
Sbjct: 74 RGI 76
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.3 bits (75), Expect = 0.035
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
VT +D PGH F G AD VL+VAA G
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.061
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
P+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 188 PVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.5 bits (73), Expect = 0.061
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
P+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 63 PVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.081
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGID 146
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ IID PGH DF + D AVL++ G G
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 182
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.5 bits (68), Expect = 0.25
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
Y + +ID PGH DF + + D +L+VAA G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 18 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 128
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 18 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 128
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.43
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 296 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 391
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 0.99
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 144 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 0.99
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 144 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTT 113
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTT 113
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 299 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 394
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -2
Query: 331 ISVSRSINDGNIVLASFELPESNIDWI---PRSRSAFSLSNTQAYL 203
I++ +++NDG+++ A + +I W+ P+ RSA S ++ A L
Sbjct: 221 IALKKNVNDGSVIHARIQTILDDILWVATLPQLRSAISFASYIAKL 266
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 36 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 194
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 36 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 194
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z73973-4|CAE54908.1| 367|Caenorhabditis elegans Hypothetical
protein F25D1.1b protein.
Length = 367
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 364 LRGSCDHVLDEISVSRSINDGNIVLASF-ELPESNI 260
LR CD VLDE V S ++ +V+ F PE NI
Sbjct: 253 LREVCDDVLDECLVKGSRDNMTMVVVCFPAAPEVNI 288
>Z73973-3|CAA98265.1| 468|Caenorhabditis elegans Hypothetical
protein F25D1.1a protein.
Length = 468
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 364 LRGSCDHVLDEISVSRSINDGNIVLASF-ELPESNI 260
LR CD VLDE V S ++ +V+ F PE NI
Sbjct: 354 LREVCDDVLDECLVKGSRDNMTMVVVCFPAAPEVNI 389
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 36 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 194
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AF026214-6|AAB71316.3| 875|Caenorhabditis elegans Hypothetical
protein F52H2.7 protein.
Length = 875
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 204 KYAWVLDKLKAERERGIQSILLSGSSKL 287
K + +DKL ER+ G+ S+L S S KL
Sbjct: 271 KPIFTIDKLPGERQIGLGSLLTSRSIKL 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,507
Number of Sequences: 27780
Number of extensions: 178697
Number of successful extensions: 580
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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