Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0161
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 136 7e-33
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 136 7e-33
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 136 7e-33
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 136 7e-33
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 83 5e-17
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 70 5e-13
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 52 2e-07
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 50 6e-07
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 37 0.006
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 37 0.006
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.075
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.099
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.099
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.099
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.13
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.13
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.17
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.17
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.23
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 31 0.40
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.70
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.70
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.70
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 0.92
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 0.92
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 29 1.2
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 29 1.2
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 28 2.8
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 2.8
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 3.7
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 6.5
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 6.5
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 6.5
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 27 6.5
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 26 8.6
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi... 26 8.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 136 bits (328), Expect = 7e-33
Identities = 64/71 (90%), Positives = 65/71 (91%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG F
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGF 123
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 136 bits (328), Expect = 7e-33
Identities = 64/71 (90%), Positives = 65/71 (91%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG F
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGF 123
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 136 bits (328), Expect = 7e-33
Identities = 64/71 (90%), Positives = 65/71 (91%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG F
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGF 123
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 136 bits (328), Expect = 7e-33
Identities = 64/71 (90%), Positives = 65/71 (91%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/51 (84%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG F
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGF 123
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 83.4 bits (197), Expect = 5e-17
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +3
Query: 57 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 236
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 237 ERERGI 254
ERERGI
Sbjct: 298 ERERGI 303
Score = 58.4 bits (135), Expect = 2e-09
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = +2
Query: 263 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G F
Sbjct: 307 VAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAF 355
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 70.1 bits (164), Expect = 5e-13
Identities = 29/67 (43%), Positives = 48/67 (71%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 231 KAERERG 251
+ ER +G
Sbjct: 158 EEERLKG 164
Score = 58.4 bits (135), Expect = 2e-09
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEF
Sbjct: 167 VEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 217
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 51.6 bits (118), Expect = 2e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
I+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 130 INTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 178
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 39 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 173
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 50.0 bits (114), Expect = 6e-07
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
++ET+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDG 166
Score = 32.7 bits (71), Expect = 0.099
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTT 113
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
P+ + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 196 PMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
P+ + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 196 PMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.075
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 281 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 30 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 149
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.099
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.099
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGG 140
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.099
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.099
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTTGHLIYKCG 137
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.13
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 284 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 394
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.13
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 284 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 394
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.17
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 296 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 394
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.17
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 278 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 394
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 31.5 bits (68), Expect = 0.23
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 246 RGIQSILLSGSSKLASTMLP-SLMLLDTEISSRT*SQEPLRLIALCSS*LLV 398
RGI L + + P L L+DT S E R +A C LLV
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTP-GHVDFSYEVSRSLAACEGALLV 182
Score = 30.7 bits (66), Expect = 0.40
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 278 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 30.7 bits (66), Expect = 0.40
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 370 ISLRGSCDHVLDEISVSRSINDGNIVLASFELPESN--IDWIPRSRSAFSLSNTQAYLKD 197
+ LRG C + + V + +G++ E PES +DW R R A + AYL D
Sbjct: 347 LRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD 406
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.70
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.70
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.70
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 0.92
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 287 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCG 137
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 0.92
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 246 RGI 254
+GI
Sbjct: 117 KGI 119
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
Y V IID PGH DF + D A+L++ + G
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGG 169
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 246 RGI 254
+GI
Sbjct: 117 KGI 119
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
Y V IID PGH DF + D A+L++ + G
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGG 169
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -2
Query: 391 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDWIPRSRSAFSLSN 218
++D+HS +L+ D + D + ++ N+VL F P+ D + +R A L N
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIAR-AIELPN 108
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 308 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 117 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIQSILLS 272
H + G+D + I K KEA+E+ S++ + K+KA + G + LS
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFSRLFLS 223
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 219 IPKHI*RILYPFPGPPSRTSRWYVC 145
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 188
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 188
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 26.6 bits (56), Expect = 6.5
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = -2
Query: 394 SSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDWIPRSRSAFSLSNT 215
SS D+ S S+ G + +S + S + V +S E +D SRS F +S +
Sbjct: 307 SSDDDESFHSVGGGSQYSNPRLSNASSASGSVNVGSSQRFSEHKLDIPECSRSDFGISVS 366
Query: 214 QAYLKDPLPISWASFSNFSMVRLSIP 137
P P FSN + LS P
Sbjct: 367 APPPPPPPPPPLPQFSNKRIHTLSSP 392
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 287 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
++Y +D PG ++ ++ G + LIVAA T F
Sbjct: 2 ARYAAGAVDCPGSPKSVRIVVVGDKGTGKSSLIVAAATDSF 42
>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1322
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 379 HSAISLRGSCDHVLDEISVSRSINDGNI 296
HS ++ S +++LD + S S DGN+
Sbjct: 433 HSHLTFESSSENLLDAVVASMSNGDGNV 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,008
Number of Sequences: 28952
Number of extensions: 171108
Number of successful extensions: 601
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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