Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0160
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   1e-15
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              75   3e-14
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           66   2e-11
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.27 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.4  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.4  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)                    29   1.9  
SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7)                    29   3.3  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   4.4  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   4.4  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 365
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 187 MGKGSFKYAWVLDKLKAERERGI 255
           MGKGSFKYAWVLDKLKAERERGI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGI 23


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +3

Query: 258 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 419
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAG 54



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 431 GQTREHALLAFTLGVKQLIV 490
           GQTREHA+L  +LGV QLIV
Sbjct: 59  GQTREHAILVRSLGVTQLIV 78


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 26/58 (44%), Positives = 40/58 (68%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISR 428
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  R
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 18/42 (42%), Positives = 30/42 (71%)
 Frame = +1

Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG 252
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207



 Score = 34.7 bits (76), Expect = 0.050
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 425 KNGQTREHALLAFTLGVKQLIV 490
           + GQTREHA+LA T GVK L++
Sbjct: 266 RGGQTREHAMLAKTAGVKHLVI 287


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 24/63 (38%), Positives = 29/63 (46%)
 Frame = +1

Query: 67   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 247  RGI 255
            RGI
Sbjct: 1987 RGI 1989


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 306 IIDAPGHRDFIKNMITGTSQADCAVLIV 389
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 404
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 58  THINIVVIGHVDSGKSTTTGHLIY 129
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = -2

Query: 502  FCLLHDELFDTEGESEQGMLTGL------TVLEIPASNSPVPAATMSTAQSA*EVPVIMF 341
            FC L D L DT+      M          T   IPA  SPVP A   +A  +   P+ + 
Sbjct: 816  FCTLRDSLLDTDAHIVDMMADTPDTTPKGTATGIPAPVSPVPNAPADSATDSDSDPIAIL 875

Query: 340  LM 335
            LM
Sbjct: 876  LM 877


>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
          Length = 369

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 454 QGMLTGLTVLEIPASNSPVP--AATMSTAQSA*EVPVIMFLMKSLCPGASMMVT 299
           Q   TGLT  E+P S  PVP     MS  QSA   P  +     L PG +  VT
Sbjct: 118 QAPATGLTGFEMPLSTQPVPVIGGGMSCCQSANPPPCCL----QLKPGNNQSVT 167


>SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7)
          Length = 154

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +1

Query: 196 GSFKYAWVLDKLKAERERGIQSILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIA 375
           GSFK    ++  +  R   + S++L GSS + ST   +L   + + S ++    P R+I+
Sbjct: 5   GSFKINAQMESSQKSRPARVTSVVLMGSSVIRSTKCATLSKPNAKSSLKS---HPARVIS 61

Query: 376 LCSS*LPVPVNSKLVSQERSN 438
                  V  ++K  SQ R N
Sbjct: 62  AVLRGNAVIRSTKCASQVRIN 82


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 255 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 395
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 IDAPGHRDFIKNMITGTSQADCAVLIVA 392
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,872
Number of Sequences: 59808
Number of extensions: 326694
Number of successful extensions: 902
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)