Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0159
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.74 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   9.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = -1

Query: 390 TLYATLILGLPPSLTTSKCQCFMSACTVASSNLRPMRRLASNIVLWGSSPP 238
           T +A     LPP         FMS CTV    +  M     NIVL  S  P
Sbjct: 289 TQHAKSQASLPPVSYLKAVDAFMSVCTVFVF-MALMEYCLVNIVLGDSDTP 338


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 69 PFCIFNQSCYLFLKQ 25
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +2

Query: 206  RASHRRCRQEPGGDEPHNTIFDAKRLIGRKFEDATVQADMKHWHFEVVSD 355
            R   +R +Q PG  E   +  D  +L   + E +      K  H   VSD
Sbjct: 1767 RRRQQRKQQTPGDVESDESESDPDQLTSSRTESSNQLDAGKLKHIRAVSD 1816


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +2

Query: 206  RASHRRCRQEPGGDEPHNTIFDAKRLIGRKFEDATVQADMKHWHFEVVSD 355
            R   +R +Q PG  E   +  D  +L   + E +      K  H   VSD
Sbjct: 1763 RRRQQRKQQTPGDVESDESESDPDQLTSSRTESSNQLDAGKLKHIRAVSD 1812


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 394 LHPICYLDLRVASITDNLEMPVLHVGLHSSI 302
           LH  C LD++     + ++MP L V    S+
Sbjct: 284 LHLFCLLDVQWRIPFNGIQMPNLMVFYEKSL 314


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 341 EVVSDGGNPKIKVAYRV 391
           E ++ GG+ K ++AYR+
Sbjct: 69  EFLNPGGSVKDRIAYRM 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,040
Number of Sequences: 438
Number of extensions: 2926
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)