Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0158
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250...    27   9.8  
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405...    27   9.8  
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    27   9.8  

>07_01_0346 -
           2501825-2501908,2502143-2502244,2502623-2502646,
           2502693-2502819,2503122-2505109,2505804-2505821
          Length = 780

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 44  KYIEIHEGTNIFKLMKRKVKKNIFFFLNIL-VS*RDLQ 154
           K +EI+EG N FKL+   V + I   L++   S RDLQ
Sbjct: 156 KLVEIYEGFNGFKLLLVVVFRQIKEMLSLFSASIRDLQ 193


>05_07_0260 -
           28739035-28739085,28739316-28739596,28740545-28740572,
           28740653-28740749,28741216-28741272,28741353-28741415,
           28741533-28741621,28741779-28741865,28742041-28742162,
           28742245-28742500,28742595-28742744,28743120-28743278,
           28743820-28743892,28743968-28744024,28744115-28744243,
           28744469-28744560,28745220-28745252
          Length = 607

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 47  YIEIHEGTNIFKLMKRKVKKNIFFFLNILV 136
           Y  I + TNIF   K+   +++F FL IL+
Sbjct: 113 YFYICDRTNIFPETKKSYNRDLFLFLYILL 142


>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 47  YIEIHEGTNIFKLMKRKVKKNIFFFLNILV 136
           Y  I + TNIF   K+   +++F FL IL+
Sbjct: 112 YFYICDRTNIFPESKKSYNRDLFLFLYILL 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,267,065
Number of Sequences: 37544
Number of extensions: 126571
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)