Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0158
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.70 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   0.70 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 64  FVNFDIFIFHNILEVKSNPVK 2
           +VN  +   H I+E+ SNP+K
Sbjct: 62  YVNKGVTYKHTIIEMDSNPIK 82


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 5   YRITLNL*YIMKNKYIEIHEGTNIFKLMKRKVKKNIFFFLNIL 133
           Y+  LNL    K+     H  TN+  L KR V K   F + IL
Sbjct: 445 YKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEIL 487


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
          protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 82 FKNVSTFVNFDIFIF 38
          F NV  ++NFD F F
Sbjct: 3  FNNVIKYINFDRFFF 17


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 35  MKNKYIEIHEGTNIFKL 85
           +KNK    H GT++F++
Sbjct: 450 LKNKVETTHSGTSLFRI 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,642
Number of Sequences: 438
Number of extensions: 1903
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)