Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0157
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 4.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.4
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.4
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.4
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 25 7.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.1
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 24 9.4
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 24 9.4
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 24 9.4
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 9.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 24 9.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 9.4
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 366 IVLLLLLHYRKQNSNKTHSTGRCSLHLNCKKRTKNKHKVIVVRKRTR 226
++ L+L + + N+ T + L L C+++T N H + V+ TR
Sbjct: 105 LIWTLILRFTIADINEEGLTAKEGLLLWCQRKTANYHPEVDVQDFTR 151
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 5.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 78 FKSFIL*ELNNSILEIYAKITCHNCQTKGESW*HSKNKLVRVMMNL*TGNAY 233
F+SF EL++ +++ +TC N + HS V ++ L +GNAY
Sbjct: 241 FRSFSFLELHSLAIKLSKLVTCKN-EVVPIMVSHSPALFVGILAILYSGNAY 291
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 252 LCVCSLFFFYNLNEVNNVQCCEFYYYFVFCSVVTI 356
L + L FF NL V C F F F +VTI
Sbjct: 256 LSLALLIFFLNLVPKPTVSFCVFLRDFDFVGIVTI 290
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 377 YRFALFFYCYYTTENKIVIKLTALDVVH 294
+RF +Y Y TE K+V + +V H
Sbjct: 91 FRFTAGYYLYLCTERKVVAVIGGHNVYH 118
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 364 NAKRYGEWRRRRKYQCVTDQ 423
NA EWR+R YQ +TD+
Sbjct: 20 NAGSNAEWRKRIIYQILTDR 39
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -2
Query: 129 RRFQVWNYLVLRV*KT*IIDLNLSNTNIISMTQM 28
R+FQ W ++V + ++ + + NL N ++S ++
Sbjct: 411 RKFQSWGHVVKHITQSIMHNNNLKNHELVSSAEL 444
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 253 SYCRTKTYALPVHKFIITRTSLFLE 179
+Y ++ T+ PVH+ I+ R FL+
Sbjct: 308 AYLQSYTHRYPVHRAIMCRCEYFLD 332
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 229 RTFSYDNNFVFVLCSFFTI 285
+ +SY+N+F+ VL S F +
Sbjct: 149 KLYSYENSFIVVLNSIFVV 167
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 387 PFSISFCIVLLLLLHYRKQNSNKTHSTGRCSLHLNCKKRTKNKHKVIV 244
P +I+ L+ Y QNS KT L L CK KN ++I+
Sbjct: 643 PVTINIQSTTYYLIGYANQNSKKTLDQPTSLLVLGCK--AKNVSELIL 688
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 431 P*VWSVTHWYLRRRRHSPYRFALFFYCY 348
P V V HW R++ +SPY L Y Y
Sbjct: 187 PMVLLVKHWAKRKQINSPYFGTLSSYGY 214
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 382 EWRRRRKYQCVTDQ 423
EW+RR YQ +TD+
Sbjct: 30 EWKRRSIYQIITDR 43
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 263 TNTKLLSYENVRVAGSQVHHYTNEFVFGMLPGFTFCL 153
T+ K+ S N SQV+ Y E++ + FTF L
Sbjct: 1101 TDFKIFSVNNTEFK-SQVYLYLREWINALFDRFTFLL 1136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,346
Number of Sequences: 5004
Number of extensions: 38274
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -