Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0157
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 31 0.57
02_05_0088 + 25712753-25713076,25713168-25713261,25713646-257137... 29 1.7
10_05_0036 + 8443957-8444112,8446063-8446129,8446685-8446743,844... 29 2.3
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 28 3.0
04_03_0134 - 11677268-11677993 28 3.0
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720... 27 7.0
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 27 7.0
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 7.0
02_04_0337 + 22131790-22132245,22132481-22132565,22132625-22132686 27 9.2
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 300 CSLHLNCKKRTKNKHKVIVVRKRTRCRFTSSSLHERVCFWNVTRIHLL 157
C L+ KR +HKV + T+ LH+R C +R HLL
Sbjct: 190 CKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFC-QQCSRFHLL 236
>02_05_0088 +
25712753-25713076,25713168-25713261,25713646-25713767,
25714005-25714127,25714471-25714575,25714673-25714714
Length = 269
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 347 YTTENKIVIKLTALDVVHFI*IVKKE 270
Y TENKIV K + + F+ IVKKE
Sbjct: 99 YVTENKIVYKASRPSYIPFMGIVKKE 124
>10_05_0036 +
8443957-8444112,8446063-8446129,8446685-8446743,
8446855-8446930,8447118-8447189,8447326-8447413,
8447489-8447744,8447934-8448049,8448247-8448470,
8448685-8448716,8448882-8449018,8449200-8449289,
8449383-8449557
Length = 515
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -2
Query: 315 HSTGRCS--LHLNCKKRTKNKHKVIVVRKRTRCRFTSSSLHER 193
H+ GRCS LHL CKK IV T S ++ +
Sbjct: 213 HAPGRCSVLLHLYCKKGNSGTEPYIVAHNMILSHATVSDIYRK 255
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 327 SNKTHS-TGRCSLHLNCKKRTKNKHKVIVVRKRTRCRFTSSSLHERVCFWNVTRIHLLFG 151
S K H+ G + + ++ N+ K ++ + +C+ S L E + W V I +
Sbjct: 589 SGKIHTKVGEAEMEI-VERGVGNEVKYVMPKVWVQCKGLPSELREYLIIWAVGSILGITK 647
Query: 150 SCDM*F*RRFQVWNYLVL 97
+ DM F RR+ + VL
Sbjct: 648 AVDMIFTRRYDIARLQVL 665
>04_03_0134 - 11677268-11677993
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 269 QRTNTKLLSYENVRVAGSQVHHYTNEFVFG 180
QR T++ S E + + + HYT EF+FG
Sbjct: 151 QRVRTRVASLERIIMPRYRQGHYTPEFMFG 180
>08_02_0493 -
17770723-17770758,17770772-17770996,17771051-17772033,
17772196-17772720,17772801-17772990
Length = 652
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 264 NKHKVIVVRKRTRCRFTSSSLHERVCFWNVTRIHLLFGSCDM*F*RRFQVWNYLVL 97
N+ K ++ +C+ S L E + W V I + + DM F RR+ + VL
Sbjct: 337 NEVKYVIPNVWVQCKGIPSELREYLIIWAVGSILGITKAVDMVFTRRYDIARLQVL 392
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -2
Query: 264 NKHKVIVVRKRTRCRFTSSSLHERVCFWNVTRIHLLFGSCDM*F*RRFQVWNYLVL 97
N+ K ++ + +C+ S L E + W V I + + DM F RR+ + VL
Sbjct: 511 NEVKYVMPKVWVQCKGLPSELREYLIIWAVGSILGITKAVDMIFTRRYDIARLQVL 566
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 243 VRKRTRCRFTSSSLHERVCFWNVTRIHLLFGS 148
V++ + R ++ +VCFW H+L GS
Sbjct: 274 VQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
>02_04_0337 + 22131790-22132245,22132481-22132565,22132625-22132686
Length = 200
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 370 KRYGEWRRRRKYQCVTDQTHGQLH 441
KR + RRR++Y+ D+ HG +H
Sbjct: 26 KRSHQARRRQRYEDQEDRVHGNVH 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,712
Number of Sequences: 37544
Number of extensions: 216833
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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