Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0157
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   4.1  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   27   5.4  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.4  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   9.5  
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      27   9.5  

>SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 342 YRKQNSNKTHSTGRCSLHLNCKKRTKNKHKVIVVRKRTRCRFTSSSLHE 196
           YRK  +NK  S G   + +  KKRT++KHK++ V  + + +    +L E
Sbjct: 171 YRKNYNNKI-SEGYDGIRMKKKKRTRHKHKLVEVTTKKQKKKCKDALDE 218


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 297 SLHLNCKKRTKNKHKVIVVRKRT---RCRFTSSSLHERVCFWNVT 172
           +LH     R+   H+ +  R  T   R  F S +LHE V FW++T
Sbjct: 127 TLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVTFWSIT 171



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 297 SLHLNCKKRTKNKHKVIVVRKRT--RC-RFTSSSLHERVCFWNVT 172
           +LH     R+   H+ +  R  T   C  F S +LHE V FW++T
Sbjct: 72  TLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVTFWSIT 116


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -2

Query: 345 HYRKQNSNKTHSTGRCSLHLNCKKRTKNKHKVIVVRKRTRCRFTSSS 205
           H RK+ S K     R S  L+ ++R+K+K K    R R+R R  SSS
Sbjct: 266 HSRKKKSRKHRHRSRSS-SLSSRRRSKHKRKS--KRDRSRSRDRSSS 309


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 339  RKQNSNKTHSTGRCSLHLNCKKRTKNKHKVIVVRKRTRCRFTSSSLHER 193
            R ++ +K      C  H   +KR +++HK   +R   R   + + LH+R
Sbjct: 877  RLRDRHKALCNRLCDRHEVSRKRLRDRHKASRIRLHDRHEASRNRLHDR 925


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 271 NKEQTQSYCRTKTYALPVHKFIITRTSLFLECYQDSPFVW 152
           +++Q+QS   TKT+    + + +++    + CY D    W
Sbjct: 48  HQQQSQS---TKTHPAMFYSYFVSKVCCVMRCYYDGTVTW 84


>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 228 RCRFTSSSLHERVCFWNVTRIHLLFGSCDM 139
           RC  TS S    VC   VT  H++  SCD+
Sbjct: 139 RCCETSPSWKTNVCCIGVTPRHVMVTSCDV 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,550
Number of Sequences: 59808
Number of extensions: 283781
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)