Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0157
         (451 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118497-1|AAM49866.1|  450|Drosophila melanogaster LD07917p pro...    31   0.94 
AE014298-1517|AAF47969.1|  450|Drosophila melanogaster CG1637-PC...    31   0.94 
AF239667-1|AAF43091.1|  356|Drosophila melanogaster putative RNA...    29   3.8  
AE014298-1827|AAF48215.3|  356|Drosophila melanogaster CG4396-PA...    29   3.8  

>AY118497-1|AAM49866.1|  450|Drosophila melanogaster LD07917p
           protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 264 SLFFFYNLNEVNNVQCCEFYYYFVFCSVVTIKEQCKTIWRMAAATQIPMCHRPNSWSITY 443
           SL++ +NL  V+ V      YYF+      + +Q + + R  A   +P       W ITY
Sbjct: 234 SLWYSFNLGPVHFVSFSTEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITY 293


>AE014298-1517|AAF47969.1|  450|Drosophila melanogaster CG1637-PC,
           isoform C protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 264 SLFFFYNLNEVNNVQCCEFYYYFVFCSVVTIKEQCKTIWRMAAATQIPMCHRPNSWSITY 443
           SL++ +NL  V+ V      YYF+      + +Q + + R  A   +P       W ITY
Sbjct: 234 SLWYSFNLGPVHFVSFSTEVYYFLSYGFKLLTKQFEWLERDLAEANLPENRAKRPWIITY 293


>AF239667-1|AAF43091.1|  356|Drosophila melanogaster putative RNA
           binding protein protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 SNNKRTMQNDMENGGGDANTNVSPTKLMVNYIPE 448
           +N    ++N   NG  D + + S T L+VNY+P+
Sbjct: 2   TNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQ 35


>AE014298-1827|AAF48215.3|  356|Drosophila melanogaster CG4396-PA
           protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 SNNKRTMQNDMENGGGDANTNVSPTKLMVNYIPE 448
           +N    ++N   NG  D + + S T L+VNY+P+
Sbjct: 2   TNAMDIVKNGSANGSVDGSNDESRTNLIVNYLPQ 35


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,574,096
Number of Sequences: 53049
Number of extensions: 401139
Number of successful extensions: 1228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)