Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0157
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical p...    27   4.8  
AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine re...    27   4.8  
Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical
           protein F28B1.2 protein.
          Length = 973

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 255 CVCSLFFFYNLNEVNNVQCCEFYYYFVFCSVVTIKEQC 368
           C C++  F   N  NNV    FYY  V+  +V   + C
Sbjct: 315 CKCNVKLFNKKNVQNNVGGNYFYYNTVWQPIVKTNDDC 352


>Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical
           protein F40F9.5 protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
 Frame = +3

Query: 276 FYNLNEVNNVQCC----EFYYYFVFC--SVVTIKEQCKTIWRMAAATQIPMCHRPNSWSI 437
           F+ LNE   V CC    E   + V C   ++T      T W  A   QI   HR  + + 
Sbjct: 46  FHALNETKGVWCCPVNVEPILFLVMCGFGLMTTNNSLFTYW--ARCVQIAQTHRELADNA 103

Query: 438 TY 443
           TY
Sbjct: 104 TY 105


>AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine
           receptor, class x protein110 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 19  FIIHLCHTNYVCVAQI*VNNLSLSY 93
           F +  C  +++C+  + VN+LSL Y
Sbjct: 229 FFLQSCFQDWICMVDVAVNHLSLEY 253


>Z82057-3|CAB04860.2|  303|Caenorhabditis elegans Hypothetical
           protein T26H8.2 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 383 SPYRFALFFYCYYTTENKIVIKLTALDVVHFI*IVKKEQRTNTKLLSYEN 234
           SP    + +Y  Y   N IVI +  +DV+     V K +   TK+ +Y N
Sbjct: 163 SPSCSTIVWYADYLKFNSIVIAIVIIDVI----TVSKVRSFKTKISAYSN 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,382
Number of Sequences: 27780
Number of extensions: 221588
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)