Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0157
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   0.88 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -3

Query: 359 FYCYYTTENKIVIKLTALDVVHFI*IVKKEQRTNTKLLSYENVRVAGS 216
           F CYY+ +     K    D ++      +  RT   L ++++++  GS
Sbjct: 15  FSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGS 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 127 TLKSHVTTAKQKVNPGNIPKTNSFV 201
           T++S VTT+K  V+P    + N  V
Sbjct: 267 TIQSSVTTSKMMVSPRLYDRQNGLV 291


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 347 SNNKRTMQNDMENGGGDANTN 409
           +NN     ND  NG G +N N
Sbjct: 247 NNNNNNGANDNGNGNGASNNN 267


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 350 NNKRTMQNDMENGGGDANTNVSPTKLMVNYIPEL 451
           NN     N+  N   + N N       +NYI ++
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQI 361


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = -2

Query: 354 LLLHYRKQNSNKTHSTGRCSLHLNCKKRTK 265
           L++H R     K +    C     C K+ K
Sbjct: 191 LVIHMRTHTGEKPYVCKACGKGFTCSKQLK 220


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 282 CKKRTKNKHKVIVVRKRTRC 223
           C    KN+ K +  +K +RC
Sbjct: 101 CVDNAKNEDKCLTAQKFSRC 120


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 282 CKKRTKNKHKVIVVRKRTRCRFTSSSLHER 193
           C +++ ++ K+I  R R   +  SSS+ +R
Sbjct: 6   CDRKSLSQRKIIRSRSRRYSKRFSSSIVDR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,136
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)