Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0157
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12330.1 68414.m01425 expressed protein                             31   0.48 
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ...    28   3.4  
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR...    27   5.9  

>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 345 HYRKQNSNKTHSTGRCSLHLNCKKRTKNKH 256
           H+R+ NSN  H      LH N K +T+ +H
Sbjct: 59  HHRRTNSNNNHQHTLTPLHHNGKPQTRKRH 88


>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
           ZF-HD homeobox protein-related predicted proteins,
           Arabidopsis thaliana
          Length = 334

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 399 ASPPPFSISFCIVLLLLLHYRKQNSNKTHSTGRCSLHLNCKKRTKNKHKVIVVRKRTRCR 220
           ASPPP S S+   +LL L     N+N   S    +          ++H +   RKR R +
Sbjct: 150 ASPPPISSSY---MLLSLSGTNNNNNNLASFSDLNFSAGNNHHHHHQHTLHGSRKRFRTK 206

Query: 219 FT 214
           F+
Sbjct: 207 FS 208


>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1190

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 319 NSQHWTLFTSFKL*KKNKEQTQSYCRTKTYALPVHKFIITRTSLFLECYQDSPFVW 152
           +S+ WT     K  +K  +    +   K+  L + +FI  + S   +CY  S F+W
Sbjct: 751 SSEQWTPNKFLKQVQKTPKLMSEFYGFKS--LDIMQFIYRKDSASFQCYSFSDFLW 804


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,876,465
Number of Sequences: 28952
Number of extensions: 189200
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)