Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0156
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    28   0.71 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    26   3.8  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   3.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.7  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   8.8  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   8.8  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 78  FYFKSLS*LLLQFHKKNMHILFCVVFYI--YFFCSVIYFSL*LFKYE-KKNKKIQKFIAT 248
           +Y      L+    K  M +    +F+I  + FC    FSL LF Y+ K+ ++ +KF+  
Sbjct: 447 YYMDPYGKLIASPSKHWMRLFPNKLFFILSFIFCLFFLFSLVLFGYDPKRRQRFKKFLLR 506

Query: 249 LE 254
           L+
Sbjct: 507 LQ 508


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 61  NPFHLYFILKVFHSYCCNFIKKTCIFYFVSCFIYIFSV 174
           +PF+L+  + V    C +F+  +C   F+S +    SV
Sbjct: 201 HPFYLFQAVSVLIWLCDSFVFYSCCIVFISSYSIFLSV 238


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 406 STLNYSSNECLKNSSYVKCKK*I*VYI*N*RILLYIEFTEYVL--NKILYT*YSSVAMNF 233
           ST+  S N  L+      C   I  +I    I  Y +  E+++   +ILY  Y +V+  +
Sbjct: 93  STIKDSWNHHLEKLFIATCLLSISTFIDMLAIYAYPDTGEWMVWVIRILYYIYVAVSFIY 152

Query: 232 CIFLFFFSYLNNY 194
           C+ + FF+  NN+
Sbjct: 153 CV-MAFFTIFNNH 164


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 265 IVFYLVHIR*IQCIVIFFNFIYILKFISCI*HMNYSSNIHLKN 393
           IVF LV I  +     +  F  IL  +SC+ +   + N  LKN
Sbjct: 40  IVFPLVSIFSLPQKQTYHRFFSILSLVSCLAYFTMACNYGLKN 82


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 117 HKKNMHILFCVVFYIYFFCSVIYFSL*LFKYEKK 218
           H  ++ + + ++  IYFF +  YFSL   K+E +
Sbjct: 684 HFIHLRVWYVLLHKIYFFIASAYFSLKNEKFENE 717


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 483 NYESKYTQPHYEKMLETIKWSI 418
           N + +  + HY+K    IKWSI
Sbjct: 115 NKKRRLNRTHYDKKSHLIKWSI 136


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 22  DISRLRLSRFPTFNPFHLYFILKVFHSYCCNFI 120
           +I+  +++  PTF  +H   + K+F     NF+
Sbjct: 152 EIAEQQMNLMPTFEKYHFKTLNKLFQEAGSNFV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,955
Number of Sequences: 5004
Number of extensions: 38798
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)