Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0156
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine r...    30   1.1  
Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    28   4.5  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    28   4.5  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    27   6.0  
AF026209-5|AAB71279.2|  344|Caenorhabditis elegans Serpentine re...    27   7.9  

>AF024503-11|AAG24091.2|  325|Caenorhabditis elegans Serpentine
           receptor, class u protein24 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 135 ILFCVVFYIYFFCSVIY--FSL*LFKYEKKNKKIQKF-IATLEYYVYSILFST 284
           +LF  V YI   C +++   S  L +Y+ KN  IQ F + TL + +  + F+T
Sbjct: 31  LLFVPVLYIPATCVIVFRICSTLLIEYKNKNVNIQLFGVITLSHVMCLLFFTT 83


>Z93379-7|CAD54132.1|  188|Caenorhabditis elegans Hypothetical
           protein F21H7.12 protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 88  KVFHS-YCCNFIKKTCIFYF--VSCFIYIFSVV 177
           ++ HS Y C+ I    +F F  V+C +Y+FS+V
Sbjct: 130 RLIHSDYQCSIIVPISVFVFSIVTCIVYLFSIV 162


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 207
           Y  N I  T +  F+S   +  SV  FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 171 RKNIYKTRHKIKYACFFYEIATITMKD 91
           R N+YKT ++IKY    Y IA + + D
Sbjct: 175 RDNLYKTDNRIKYFFNEYSIAIVRVSD 201


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 YCCNFIKKTCIFYFVSCFIYIFSVV*FTSVCNYSN 207
           Y  N I  T +  F+S   +  SV  FT+ CN S+
Sbjct: 245 YVLNLIAPTAVITFISIIGFFTSVNPFTNFCNVSS 279


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 120 KKNMHILFCVVFYIY-----FFCSVIYFSL*LFKYEKKNKKIQKFIATLEYYVYS 269
           KK + +    +F IY     + CS++   +   KY + N  IQ F+A  + Y+++
Sbjct: 573 KKWVRVASLALFPIYTAFAIYGCSILRVDISPVKYIRDNSPIQTFVALADKYIWA 627


>AF026209-5|AAB71279.2|  344|Caenorhabditis elegans Serpentine
           receptor, class j protein25 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 40  LSRFPTFNPFHLYFILKVFHSYCCNFIK 123
           +S FP F+P  + F +  F + C NF K
Sbjct: 288 VSTFPFFDPTAIIFFIPSFRAKCINFGK 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,238
Number of Sequences: 27780
Number of extensions: 207417
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)