Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0156
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61750.1 68414.m06964 expressed protein contains Pfam profile...    27   5.6  
At2g25380.1 68415.m03039 zinc finger protein-related very low si...    27   9.8  

>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
           PF01657 domain of unknown function
          Length = 352

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +1

Query: 244 QHLSIMYIVFYLVHIR*IQCIVIFFNFIYILKFISCI 354
           QH+ ++Y +F+L++I+     + +  ++++L  I  I
Sbjct: 296 QHIHVIYHIFFLINIKTYLIYITWIIYLFLLSTIGTI 332


>At2g25380.1 68415.m03039 zinc finger protein-related very low
           similarity to SP|O95376 Ariadne-2 protein homolog
           (ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
           profile PF01485: IBR (In Between Ring fingers) domain
          Length = 350

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 73  LYFILKVFHSYCCNFIKKTCI 135
           ++F  K  H YC + +K+TC+
Sbjct: 212 MFFTDKCLHRYCFSCVKQTCV 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,239,243
Number of Sequences: 28952
Number of extensions: 163039
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)