Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0154
         (523 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ297932-1|CAC35452.1|   90|Anopheles gambiae gSG1a protein prot...    25   1.5  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.6  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   6.2  

>AJ297932-1|CAC35452.1|   90|Anopheles gambiae gSG1a protein
           protein.
          Length = 90

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 147 WCCRASILYSAVICS 103
           WCC  S +  AV+CS
Sbjct: 7   WCCLLSFIAMAVLCS 21


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 86  HNPVGRSSHHL 54
           H+PVG  SHHL
Sbjct: 809 HSPVGAGSHHL 819


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 167 EKEAEMKFQKLKEAKEILCDPSKR 238
           +KE E   QK KEA+E L +  KR
Sbjct: 898 QKELESWIQKEKEAQEKLEEDGKR 921


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,497
Number of Sequences: 2352
Number of extensions: 11459
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)