Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0152
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.4  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   2.5  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   2.5  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   4.4  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   7.6  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 40  ILVSRCLQISKRVCLCAGLR*VTQGW--LLELRIPSGSRL 153
           I++ +CL+ SKR C+   LR  + G     ELR   G RL
Sbjct: 278 IMIKKCLETSKRFCIAMPLRARSDGHNEHRELRNARGQRL 317


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 189 QYQKLVDLKRLPSKDKVAVPSKRKTAGIPKMVPYSSVGVAPRRPWNPFP 335
           Q Q+    ++ P+    + P +RKT    + +P SS+ + P +P   FP
Sbjct: 317 QQQQSPKAQQPPAHLVQSAPVQRKTTPKIQRLPPSSIQIPPPKPMQKFP 365


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 481 IISSRWTRYMWKRRAAGDHPGHNPERDAYEALA 579
           ++SS + RY+W    A + P H P  +A E L+
Sbjct: 337 LVSSNFERYLWYLALATEAPNHTP-AEASEILS 368


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 332 ERVPRAAWCDANA*IGYHLWYASGLPFRRHSNFVFRR*SLQIDQLLVLSESP 177
           +R PRA W      I  + W +   PF RH  +V R+ +  +  ++   E+P
Sbjct: 287 KRTPRALWYMMLGRINPNRWGSGEGPFDRHDWYVQRKDNSIVRYVIDYYEAP 338


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 544 HNPERDAYEALAACPHMRGVIPRYYRXL 627
           +NP+  AYEA+  C  M G   ++Y+ L
Sbjct: 651 YNPDTGAYEAVCKC--MSGFSDQFYKEL 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,856
Number of Sequences: 5004
Number of extensions: 52531
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)