Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0152
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 30 1.5
SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025) 29 2.6
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10) 28 6.0
SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2) 28 6.0
SB_29465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35) 28 6.0
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 28 6.0
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 28 8.0
SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 238 LLCLLKGRPLAYQRWYPIQALASHHAARGTRSHANSY 348
L C +KG P+ Y WY H+A T S+ NSY
Sbjct: 176 LSCWVKGNPVPYVTWYSPNGTLLHNA---TNSNNNSY 209
>SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)
Length = 348
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 519 SCCGRPPRPQP*TRCLRSPCSLSSYAWRYSSLLSXI 626
SC PRPQ TR +R P S S A R S L+ +
Sbjct: 297 SCIQPSPRPQSITRAVRQPWSKDSLAIRRSFRLAKV 332
>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 483 H*LPLDPVHVETSCCGRPP 539
H +PL P+H +CC PP
Sbjct: 162 HPIPLPPIHRSEACCSPPP 180
>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1706
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 117 ASRVTNPVWLSSELPGRLYVRALRQYQKLVDLKRLPSKDKVAVPSKRKTAGIPKMVPYSS 296
AS PV ++ +P L A+R +++ R P+ V VP K+ AG+ ++ +SS
Sbjct: 1211 ASSGVRPVAVTPRIPVTLTPNAIRPGAQILVSVR-PASKGVTVPGKQIVAGVKQVPIHSS 1269
Query: 297 VGVAPR 314
+ R
Sbjct: 1270 PDILAR 1275
>SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)
Length = 1347
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 467 AGHPGSLAPAGPGTCGNVVLRATTPATTLNEMLTKPL 577
A H L+ GP TC + A T T+N+ T PL
Sbjct: 778 AAHEPELSLIGPYTCRRELAAAFTRTPTVNQRATDPL 814
>SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)
Length = 512
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 467 AGHPGSLAPAGPGTCGNVVLRATTPATTLNEMLTKPL 577
A H L+ GP TC + A T T+N+ T PL
Sbjct: 272 AAHEPELSLIGPYTCRRELAAAFTRTPTVNQRATDPL 308
>SB_29465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 131 RNSRSHPCVTHRKPAHKHTRLLICKQRLTSMETSANRASEVN 6
RN RSH KP TRLL C R S+ T++ R N
Sbjct: 85 RNGRSH--FYPFKPVLAFTRLLYCAHRAASLTTTSFRGESHN 124
>SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)
Length = 1171
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +1
Query: 55 CLQISKRVC-LCAGLR*VTQGWLLELRIPSGSRLSYPDDFTCGLSDSTRSWSI*SDYLRK 231
CL+I + C +C+ + G + I S + + + L + R W + +++L
Sbjct: 451 CLRIDFKGCKVCSDALGLESGEIENDAIQSNLYDQFAEPYNARLRMNKRGW-LTTEHLLN 509
Query: 232 TKLLCLLKGRP-LAYQRWYPIQALASHHAARGTRSHA 339
KL ++ P LA Q S+H AR T S++
Sbjct: 510 VKLFIIVDFGPGLAVVNGIATQGYGSYHVARYTLSYS 546
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 102 SDAGVASRVTNPVWLSSELPGRLYVR 179
SD G S TN W+SS+ P ++R
Sbjct: 413 SDCGTMSSDTNVTWISSDCPSNAHLR 438
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 395 NALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTCGNVVLRATTPATTLNEMLTKP 574
+A E + + D + + +S L G G+ A G G V ++ T ++LN+ L P
Sbjct: 134 DATESAENSQDEEVATNASGMPSLKGEGGASAKVADGLTGEVGNKSKTKGSSLNDDLLYP 193
Query: 575 LQ 580
L+
Sbjct: 194 LK 195
>SB_3744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 593 CVALFLATIVNWNTTVNGFIELQDLLH 673
CVA L I + + FIELQD LH
Sbjct: 46 CVAAILRNITFTKNSYDSFIELQDKLH 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,733,189
Number of Sequences: 59808
Number of extensions: 427220
Number of successful extensions: 1313
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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