Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0149
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.0  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -1

Query: 266 LPRCREVTDEFNVLLSVKHISEISEFARRHGVSNDR--GLHAHSSQYEERG*GREILVAL 93
           LP C  V    N+    +    +     RH  SN    GLH H+S  + +   +E L+  
Sbjct: 375 LPGCHMVDSCSNIQTGEQFARLLRHNFNRHLNSNRAPLGLHFHASWLKSKKEFKEELIKF 434

Query: 92  VKEL 81
           ++E+
Sbjct: 435 IEEM 438


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -1

Query: 266 LPRCREVTDEFNVLLSVKHISEISEFARRHGVSNDR--GLHAHSSQYEERG*GREILVAL 93
           LP C  V    N+    +    +     RH  SN    GLH H+S  + +   +E L+  
Sbjct: 382 LPGCHMVDSCSNIQTGEQFARLLRHNFNRHLNSNRAPLGLHFHASWLKSKKEFKEELIKF 441

Query: 92  VKEL 81
           ++E+
Sbjct: 442 IEEM 445


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 486 CSTTASGFRFGAF 448
           C   A+GF FGAF
Sbjct: 8   CGEPAAGFHFGAF 20


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/53 (22%), Positives = 19/53 (35%)
 Frame = -3

Query: 405  PPWPSTKMCCWVRHTNCLFWNISLFTMATALEPLSRISTT*QRVVKTPSVQGS 247
            P W +     W   T   +W  +     T   P +  +TT       P+ QG+
Sbjct: 1033 PDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPT-QGT 1084


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,599
Number of Sequences: 336
Number of extensions: 4351
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)