Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0149
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    28   1.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   1.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   1.9  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    26   4.4  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   7.6  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   7.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   7.6  

>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 60  VENPTDLKFLYESHENFSPL--PSFFILAGMCMEAP 161
           +EN +DL+ LYE+  N  PL  PS+F    +C+  P
Sbjct: 177 IENNSDLETLYENIHNVLPLITPSYFFTL-LCLILP 211


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 63  ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 236
           ENP   K +Y+ H N  P  S          +P+  N +P GK   +T V+   + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 63  ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 236
           ENP   K +Y+ H N  P  S          +P+  N +P GK   +T V+   + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 465 ILMPSWNNAPPKTRLSLQNVW*PQSSAY 548
           +  P+ +N PP+T+ ++ + + P+SS Y
Sbjct: 80  VCFPNQHNLPPETQYAITHRFDPESSTY 107


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 351 FWNISLFTMATALEPLSRISTT*QRVVKTPSVQGSHRR 238
           F+ +  F    AL+P +R+S T +RV  +P  + S  R
Sbjct: 280 FFIVVYFIFGYALKPAARVSRTGRRVFSSPFSKTSPSR 317


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 573 WTQEADSPWTRIP 611
           WT+E D PW + P
Sbjct: 236 WTKEGDGPWQKTP 248


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 142 ECAWRPRSLLTPCRRANSLISLMCFTESSTLNSSVTSLHRGSLHNPLLRCRYPGQGLQR 318
           EC   P++L  P   ++S+I   C   S     ++T LH+ S    + R   P  G+++
Sbjct: 159 ECHSYPQALAVPASISDSVIYYGCKYRSKNRFPTLTYLHKNSF--SITRASQPLVGIRQ 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,380
Number of Sequences: 5004
Number of extensions: 69103
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)