Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0149
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0151 - 21237677-21237704,21237759-21237829,21238101-212382... 37 0.017
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 31 1.1
01_01_0137 + 1249081-1249341,1249500-1250237 29 3.4
10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128 29 4.5
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190 29 4.5
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408 29 4.5
11_06_0611 + 25461469-25461655,25461670-25462238 28 7.9
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996... 28 7.9
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 28 7.9
02_01_0705 - 5259949-5263887,5266207-5266509 28 7.9
>09_06_0151 -
21237677-21237704,21237759-21237829,21238101-21238281,
21238369-21238441,21239033-21239072,21239818-21239890,
21240075-21240151,21241033-21241138,21241256-21241278,
21241369-21241440
Length = 247
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 511 LYRMSGDLNPLHIDPNVATASG 576
LYR+SGD NPLH DP VA +G
Sbjct: 218 LYRLSGDYNPLHSDPMVAQVAG 239
Score = 35.1 bits (77), Expect = 0.052
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +3
Query: 3 TYDYNAKDLVIYALGVGASVENPTDLKFLY-----ESHENFSPLPSFFILAGMCMEAPIV 167
++ Y+ +D+ +YALGVGA + D K L+ + + LP+F L + +
Sbjct: 26 SFAYDERDVALYALGVGACGADAIDEKELHLVYHRDGQPHIKALPTFASLFPF-KNSNGL 84
Query: 168 ANAMPPGKFADFTNVLHGEQYIE 236
PG D + +LHG+ YIE
Sbjct: 85 GIVDVPGLNFDASLLLHGQHYIE 107
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3
Query: 591 NRLLVSTCGRNVGI----NMQRIEVTRHSVERAWSSAVRCSTTASGF 463
NRL+V+T GR+V I NM + E R S + + VRC +G+
Sbjct: 160 NRLVVATAGRHVNIYDLRNMSQHEQKRDSSLKYQTRCVRCFPNGTGY 206
>01_01_0137 + 1249081-1249341,1249500-1250237
Length = 332
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -2
Query: 244 PTNSMYCSP*STLVKSANLPGGMALATIGASMHIPASMKNEGKGEKFSWLS*RNFKSVGF 65
PTNS ++ V+S++L GG A G + +P + +E GE LS R ++
Sbjct: 258 PTNSDNMVMMTSKVRSSDLSGGFPAAEQGMFLVVPPELLHEVSGET-PILSIRIDRAAPA 316
Query: 64 STEAPTPRA 38
+ TPRA
Sbjct: 317 IAKPTTPRA 325
>10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128
Length = 458
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 308 GSSAVAIVNSEIFQNKQLVCRTQQHIFVLGQGGFG 412
GS + N +IF +L T+ + VLGQGGFG
Sbjct: 111 GSVLQKVENIKIFTKDELKKITKNNSEVLGQGGFG 145
>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
Length = 695
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 308 GSSAVAIVNSEIFQNKQLVCRTQQHIFVLGQGGFG 412
GS + N +IF +L T+ + VLGQGGFG
Sbjct: 398 GSVLQKVDNVKIFSKDELKKITKNNSEVLGQGGFG 432
>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
Length = 332
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 308 GSSAVAIVNSEIFQNKQLVCRTQQHIFVLGQGGFG 412
GS + N +IF +L T+ + VLGQGGFG
Sbjct: 13 GSILQKVDNVKIFSKDELKKITKNNSEVLGQGGFG 47
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 267 SSQPVVTLSISWTRAPAPWPL 329
SSQP T S S ++ P PWPL
Sbjct: 77 SSQPPSTSSSSLSQLPPPWPL 97
>03_05_0207 -
21985340-21985570,21986430-21986636,21999578-21999667,
21999764-21999945,22000130-22001042,22003184-22003266,
22004622-22004939,22005044-22005107
Length = 695
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 9 DYNAKDLVIYALGVGASVENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANA--MP 182
DY++KDL+ +A GVGA+ + +K + + + + LAG +P +A P
Sbjct: 215 DYSSKDLLQHASGVGAASKRKAKVKATHLALARYLKVD----LAGSLESSPQLATVEHQP 270
Query: 183 PG 188
PG
Sbjct: 271 PG 272
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 388 ENVLLGSAYQLLILEYFTVHNGHGAGALVQDIDNVTTGCEDSLGAGKSPTNSMY 227
E ++G ++ I Y T HG GA N T C G G+ T +Y
Sbjct: 194 EESIIGGKREVSIFRYETCGTCHGTGA---KSSNDITECTQCRGQGRRATGDLY 244
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 414 DPAIARTLSASETHRSEILMPSWNNAPPKTRLSLQ 518
D +AR +SA ETH S +L + PP+ L+++
Sbjct: 1252 DFGLARIISACETHVSTVLAGTLGYIPPEYALAMR 1286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,942,387
Number of Sequences: 37544
Number of extensions: 554127
Number of successful extensions: 1738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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