Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0149
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              69   5e-12
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     32   0.37 
SB_45732| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     30   2.0  
SB_49486| Best HMM Match : MARVEL (HMM E-Value=1.6)                    29   2.6  
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 28   8.0  
SB_56882| Best HMM Match : DUF1319 (HMM E-Value=2.6)                   28   8.0  
SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 28   8.0  
SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)                 28   8.0  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    28   8.0  

>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +3

Query: 12  YNAKDLVIYALGVGASV-ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPG 188
           Y   D+++YALGVG S  E+ + LKFLYE+HE+F+ LP+F I+ G      I    M   
Sbjct: 329 YTHNDVILYALGVGVSFQEDYSHLKFLYENHEDFAALPTFGIILGQGSMMGIAGGEMAGI 388

Query: 189 KFADFTNVLHGEQYIEFVGDFP 254
           KF D   +LHGEQY+E     P
Sbjct: 389 KF-DPAKLLHGEQYLEVYKPLP 409



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 TEGVFTTRCYVVDILDKGSSAVAIVN-SEIFQNKQLVCRTQQHIFVLGQGGFGGPRNSKN 433
           T G  T R  VVD+LDKG  A+ ++N + + + ++ +C  Q  I++ G GGFGG R+S  
Sbjct: 410 TSGSITNRAEVVDVLDKGKGALVLLNVTTLDEQEEPICFNQFSIYLGGAGGFGGKRSSDK 469

Query: 434 AIGVGNAPKRNPDAVVEQRTAEDQA 508
              V + P R PDA V+++T   QA
Sbjct: 470 VKPVVSPPSRTPDASVKEKTGLTQA 494



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = +1

Query: 508 SLYRMSGDLNPLHIDPNVATASGHKKPILHGLASLGFSARHVLAKFGGNDSSNVKA 675
           +LYR+SGD NPLH+DP                A +G  ARHVL ++  ND S  KA
Sbjct: 495 ALYRLSGDYNPLHVDP--------------AFAQMG--ARHVLKQYANNDVSKFKA 534


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +2

Query: 368 RTQQHIFVLGQGGFGGPRNSKNAI-GVGNAPKRNPDAVVEQRTAEDQALSTECLVTSILC 544
           +T +H  VLG+GGFG     ++ I G   A K+     +++R  E  AL+ + L+  I  
Sbjct: 83  KTFRHYRVLGKGGFGEVCACQSKISGKMYAMKKLEKKRIKRRKGEAMALNEKTLLEKIDS 142

Query: 545 ILIPTLRPQVDTRSRFSM 598
           I + +L    +T+    M
Sbjct: 143 IFVVSLAYAYETKDALCM 160


>SB_45732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 88  FTRATRISLPYPRSSYWLEC--AWRPRSLLTPCRRANSLISLMCFTESSTLNSSVTSLHR 261
           FTR   ++ P P+SS   +C  +W   S   P    N L  L+   E +T+  S T   R
Sbjct: 18  FTRGGPVNTPLPKSSCDWQCDYSWHKPSTRQPQGAPNHL--LVNHREPNTITKSTTGNPR 75

Query: 262 GSLHNP 279
            S+  P
Sbjct: 76  ASIRQP 81


>SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 455 PKRNPDAVVEQRTAEDQALSTECLVTSILCILIPTLRPQVDTRSRFSMDSHPLVFQL 625
           P+  P  ++E  T ++   S     T   CI +P   P+ +TRS   +DS P+  +L
Sbjct: 69  PRAPPHNILEVPTKQEYVPSVTHHQTPRACIQLPANEPETETRSP-DIDSQPIAEKL 124


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 416 PRNSKNAIGVGNAPKRNPDAVVEQRTAEDQALSTECLVTSILCI 547
           P   +++ G G AP   P+A   ++ AE   LS +C +  + C+
Sbjct: 251 PTPGESSPGAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCL 294


>SB_49486| Best HMM Match : MARVEL (HMM E-Value=1.6)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  IYALGVGASVENPTDLK-FLYESHENFSPLPSFFILAGM 146
           IY L     VE     K FLY +H NF  L  +FILAG+
Sbjct: 16  IYCLAWMMFVETDEGYKWFLYINHWNFLALSLYFILAGV 54


>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 202 KSANLPGGMALATIGASMHIPASMKNEGKGEK 107
           K++ L G   LATI  ++HI     N+G GE+
Sbjct: 145 KASRLRGNKKLATIPVNLHIQRMRVNDGSGEE 176


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +3

Query: 21  KDLVIYALGVGASVENPTDLKFLYESHENFSPLPSF--------FILAGMCMEAPIVANA 176
           K + IYALG+G +++ P DLK +  S +N     SF         I + +C++ P+    
Sbjct: 119 KGVNIYALGIGTNLDLP-DLKRMASSADNVLTAESFDDLLIVIDEIKSKICLQVPV--GT 175

Query: 177 MPPGKFA 197
           +PP   A
Sbjct: 176 LPPTTLA 182


>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +3

Query: 21  KDLVIYALGVGASVENPTDLKFLYESHENFSPLPSF--------FILAGMCMEAPIVANA 176
           K + IYALG+G +++ P DLK +  S +N     SF         I + +C++ P+    
Sbjct: 418 KGVNIYALGIGTNLDLP-DLKRMASSADNVLTAESFDDLLIVIDEIKSKICLQVPV--GT 474

Query: 177 MPPGKFA 197
           +PP   A
Sbjct: 475 LPPTTLA 481


>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 89  LREPREFLSLTLVLHTGWNVHGGPD 163
           ++ P    SL  V+H G  VHG PD
Sbjct: 1   MQSPLYLFSLLFVVHVGRQVHGAPD 25


>SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 155

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  SFTRATRISLPYPRSSYWLECAWRPRS 165
           S  + TR  LPY +S YW E    PR+
Sbjct: 95  SSKQPTRDPLPYQKSKYWYENPQHPRT 121


>SB_56882| Best HMM Match : DUF1319 (HMM E-Value=2.6)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
 Frame = +2

Query: 299 LDKGSSAVAIVNSEIFQNKQLVC-RTQQHIFVLGQGGFGGPRNSKNAIGVGNAP----KR 463
           L+ G  ++    +EI Q  + V  R    + ++   G    R+ +N I + N P    K 
Sbjct: 78  LETGVGSIEEDVAEITQRLETVATRETTDLLLIRVEGLEN-RSRRNNIIIHNFPEEAEKI 136

Query: 464 NPDAVVEQRTAEDQALSTECLVTSILCILIPTLRPQVDTRSRFSMD 601
           +P  ++  R++    L    L  S + I +PT     D + R+S D
Sbjct: 137 HPQPLISSRSSSGTGLKYSNLSKSSVHIGLPTRNAMTDPQGRYSSD 182


>SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  SFTRATRISLPYPRSSYWLECAWRPRS 165
           S  + TR  LPY +S YW E    PR+
Sbjct: 95  SSKQPTRDPLPYQKSKYWYENPQHPRT 121


>SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  SFTRATRISLPYPRSSYWLECAWRPRS 165
           S  + TR  LPY +S YW E    PR+
Sbjct: 95  SSKQPTRDPLPYQKSKYWYENPQHPRT 121


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 419  RNSKNAIGVGNAPKRNPDAVVEQRTAEDQALSTECLVTSILCILIPTLRPQVDTRSRFSM 598
            R + N++G    P   P   +EQ  A   A +T  + T+ +C   PT+    +   R SM
Sbjct: 2116 RETTNSLGGFTTPMFQPP--MEQVFATPAATTTPAMDTTPVCAKTPTMDTGPEGVMRPSM 2173

Query: 599  DSHPL 613
            D+ P+
Sbjct: 2174 DTTPV 2178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,253,786
Number of Sequences: 59808
Number of extensions: 574774
Number of successful extensions: 1713
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)