Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0148
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 74 3e-14
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 3.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 7.3
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 7.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.3
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 9.6
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 9.6
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 9.6
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 73.7 bits (173), Expect = 3e-14
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +3
Query: 519 KAQQDYKNKIKK-DVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLESRLELIAQQLL 695
KA + K+K D L +T++FL+ GG+ LV G+I++ NTL +RLE++ ++ L
Sbjct: 150 KATEVLKSKNGSIDYELDAETDDFLNDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEAL 209
Query: 696 PEIRNALFGRNPNRKF 743
PEIR LFG NPNRKF
Sbjct: 210 PEIRRLLFGENPNRKF 225
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/98 (26%), Positives = 54/98 (55%)
Frame = +1
Query: 256 KQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV 435
K+ + +KI SN+LN++RL++L ++ + ++ K+L + + Y++ + LIV
Sbjct: 62 KRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIV 121
Query: 436 QALFQLMEPTVTIRVRQTDKALVESCSEKLNKTTRIRS 549
QA+ L EP + RQ D +V++ K + + ++
Sbjct: 122 QAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKN 159
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 337 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 462
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 256 SLLFIVFHNLETLLLDKTALFDV 188
SLLF+ HN +T LD T L D+
Sbjct: 1787 SLLFLTIHNTKTDELDITLLSDI 1809
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 606 GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGRNPNRKFTD 749
G + L +R I+ N + L+L++QQ+ + NAL ++ R TD
Sbjct: 1562 GALYLCLSRRAIRTGNV--TFLKLLSQQIAISVSNALLFQSLRRTITD 1607
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = -2
Query: 770 VRVTVELIGEFTVRVASEEGVTYLRQQLLGDQLQARLQSVADLDTSPGCNQLDTTTGVGR 591
+R ++ + + TV V S+EGV L GD + + + + L+ G +QL T++
Sbjct: 1347 LRSRIQNVPKRTVTVYSDEGVATLEPGAQGDDVVDKAKMI--LEKMEGHSQLLTSSANPD 1404
Query: 590 QKVL 579
++VL
Sbjct: 1405 EEVL 1408
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 468 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 292
+S F +EESL K + F + + S ++ I+ I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 662 LQSVADLDTSPGCNQLDTTTGVGRQKVLSVDF 567
LQ V+ + SP L VG+ +V+S DF
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDF 254
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 349 YVRDLHALSVPSDEL 305
+V DLHAL+VP D L
Sbjct: 56 FVADLHALTVPQDPL 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,149
Number of Sequences: 5004
Number of extensions: 55716
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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