Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0148
(810 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 51 8e-09
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 33 0.21
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2) 29 3.4
SB_41189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 5.9
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 29 5.9
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_20810| Best HMM Match : rve (HMM E-Value=0.00014) 28 7.8
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 28 7.8
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +1
Query: 325 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 504
K E + +LDEA +RL +V +D Y +++ LI Q L+QL+E V IR R+ D +LV
Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127
Query: 505 E 507
+
Sbjct: 128 K 128
Score = 41.1 bits (92), Expect(2) = 8e-09
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +3
Query: 606 GGIELVAARGRIKISNTLESRLELIAQQ 689
GGIEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261
Score = 36.7 bits (81), Expect(2) = 8e-09
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 510 LLGKAQQDYKNKIKKDVVLKVDTENFLSPD 599
+ G A ++YK + KK++ L VD +NFL PD
Sbjct: 174 VFGPATEEYKKQTKKEIELTVDEQNFLGPD 203
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 271 QKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEV 387
Q+ +++ + R+ LK +ED ++N+LDE R + EV
Sbjct: 134 QRALRTERDICTKRINTLKTKEDEIKNILDEQRGKAEEV 172
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 531 DYKNKI-KKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLES 665
DY N+I D+V++ D N L PD+ G IEL R + SN ++S
Sbjct: 47 DYGNRIIGLDLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQS 90
>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
Length = 611
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 331 REDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVES 510
++DH + L+E RK+LAE+ K EL + + Q I Q + +VES
Sbjct: 74 KKDHRKEKLEERRKKLAELLLQEKTEYELAQQKLYEHWKQNAPELRQIESEQLKEHVVES 133
Query: 511 CSEK-LNKTTRIRSRR 555
E+ ++K +++ R
Sbjct: 134 WGEQVVDKAENLKTAR 149
>SB_41189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 250 EGKQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAE 384
E K+ +++K ++++ +AR K RE H N L EA KRL +
Sbjct: 40 ERKEKDIKKAMETAEE-KRARRLAKKKREKHGENHLSEAEKRLRD 83
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 313 LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 423
LK+LK R H RN EA+++ E ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +1
Query: 235 GIL*KEGKQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 414
G+ +GK + + N QA L+ + +D+++ D +KRLA++ + ++YS+
Sbjct: 2436 GLTTDKGKLYHDFENAKRKNHDLQAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +1
Query: 268 LQKKIQSSNMLNQARLKVLKVREDHVRNV---LDEARKRLAEVPKDTKLYSELLVTLIVQ 438
LQK+I+ M +Q ++ + D V+N+ LDE L++V K +YS + +
Sbjct: 1262 LQKQIKKGKMRHQQTKELDPLSLDKVKNLRDGLDEKITCLSDVLKSFDVYSTKTEEIRLH 1321
Query: 439 ALFQLMEPTVTIRVRQTDKALVESCSEKLNKT 534
+++ +++ L+ + SE++NKT
Sbjct: 1322 PCSPMLDR--GMKILCDSSGLLNAISEQINKT 1351
>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 556 TLC*KSTLRTFCRPTPVVVSSWLQ 627
+LC S L FC PTPV+VS++++
Sbjct: 658 SLCAMSGLILFCLPTPVLVSNFIK 681
>SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)
Length = 801
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Frame = +3
Query: 495 GSGGVLLGKAQQDYKNKIKKDVVLKVDTENFL---SPDTCGGIELVAA---RGRIKISNT 656
G + L A +DYKN+I+K+ + + ++ SP G +LV A +
Sbjct: 274 GRANLALKTAAEDYKNEIEKEAAKFIKKDFYVDDASPFLLRGKKLVQAYANNDARRFHTY 333
Query: 657 LESRLELIAQQLLP-EIRNALFGRNP 731
+ +R++LI + P + R A G NP
Sbjct: 334 VANRIQLIREHSNPNQWRYAESGHNP 359
>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
Length = 486
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 507 VLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLESRL 671
V+LGK + Y N KK V +V ++F++ C +L+ RG I + E R+
Sbjct: 406 VILGKLHETYSNVCKKRQVNQVTQDDFIA--LC---KLLETRGIITLKKAKEMRM 455
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,735,170
Number of Sequences: 59808
Number of extensions: 439644
Number of successful extensions: 1375
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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