Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0147
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 80  FVLKMISEPLLIVQCRIIKFRS*IMKVGRF 169
           FV+ ++   +LIV  R++ F + ++K  RF
Sbjct: 639 FVMDVVMLAVLIVGFRLVAFLALLVKTWRF 668


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 80  FVLKMISEPLLIVQCRIIKFRS*IMKVGRF 169
           FV+ ++   +LIV  R++ F + ++K  RF
Sbjct: 639 FVMDVVMLAVLIVGFRLVAFLALLVKTWRF 668


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 327 PLYKVIDRSWCAHPDY 280
           PLY++IDR +  + DY
Sbjct: 255 PLYELIDRKYDENVDY 270


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 58  LLTAVRPICLKNDLRATFNSSMQNN 132
           LLT    + L+ND R   N+  +NN
Sbjct: 141 LLTERSSLVLRNDFRLMSNNLNKNN 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,258
Number of Sequences: 336
Number of extensions: 3359
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)