Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0147
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)                  28   9.0  
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 493 VLIVLALLVLGHTRIPRFITTIKQYCVWQ*YSTIKCCQDF 612
           +++V++++V+    +   I  +   CVW  Y T+  C DF
Sbjct: 114 IVVVVSVVVVVSVVVVDSIVVVLFVCVWAFYFTLSFCGDF 153


>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
          Length = 426

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 237 RVSEGLSRDPTRRTGSYRRGHDPKR 163
           RVS   SR P  R  S RR H P R
Sbjct: 66  RVSSDNSRSPPHRRDSSRRSHSPSR 90


>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 237 RVSEGLSRDPTRRTGSYRRGHDPKR 163
           RVS   SR P  R  S RR H P R
Sbjct: 66  RVSSDNSRSPPHRRDSSRRSHSPSR 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,987,516
Number of Sequences: 59808
Number of extensions: 408471
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)