Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0147
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 30 2.0
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 30 2.0
AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear recep... 30 2.0
U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain (pr... 29 3.4
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 3.4
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 7.9
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 7.9
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 7.9
AF016447-8|AAG24010.1| 189|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 450 ILYYARTDNSITAIIINAKKNLNLDYHPKILLR 352
+LYY R S A ++N+ K L +D +LL+
Sbjct: 286 VLYYGRITESFMADVVNSMKELEMDETEMVLLK 318
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 450 ILYYARTDNSITAIIINAKKNLNLDYHPKILLR 352
+LYY R S A ++N+ K L +D +LL+
Sbjct: 286 VLYYGRITESFMADVVNSMKELEMDETEMVLLK 318
>AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 353
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 450 ILYYARTDNSITAIIINAKKNLNLDYHPKILLR 352
+LYY R S A ++N+ K L +D +LL+
Sbjct: 202 VLYYGRITESFMADVVNSMKELEMDETEMVLLK 234
>U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform b protein.
Length = 643
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 231 KHGNGKIRKMSSS-VERGSRGEHTNSDRLLCIVE 329
K+GNGK+ S V+ G + HTN L+C E
Sbjct: 522 KNGNGKLANGGGSGVDLGKKTVHTNGTTLICTEE 555
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 231 KHGNGKIRKMSSS-VERGSRGEHTNSDRLLCIVE 329
K+GNGK+ S V+ G + HTN L+C E
Sbjct: 514 KNGNGKLANGGGSGVDLGKKTVHTNGTTLICTEE 547
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 192 CQCVV*DRVTVPRKHGNGKIRKMSSSVERGSRGEHTNSDRLLCIVEYHYF*CHNATVF*D 371
CQCV V V R+HG R + V + G H S CI F C + D
Sbjct: 154 CQCVS-GYVDVSRQHGRPAGRVCRAVVNECAEGRHDCSSHATCIDTADGFTCRCKDSYRD 212
Query: 372 DN 377
++
Sbjct: 213 ES 214
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 192 CQCVV*DRVTVPRKHGNGKIRKMSSSVERGSRGEHTNSDRLLCIVEYHYF*CHNATVF*D 371
CQCV V V R+HG R + V + G H S CI F C + D
Sbjct: 738 CQCVS-GYVDVSRQHGRPAGRVCRAVVNECAEGRHDCSSHATCIDTADGFTCRCKDSYRD 796
Query: 372 DN 377
++
Sbjct: 797 ES 798
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 192 CQCVV*DRVTVPRKHGNGKIRKMSSSVERGSRGEHTNSDRLLCIVEYHYF*CHNATVF*D 371
CQCV V V R+HG R + V + G H S CI F C + D
Sbjct: 154 CQCVS-GYVDVSRQHGRPAGRVCRAVVNECAEGRHDCSSHATCIDTADGFTCRCKDSYRD 212
Query: 372 DN 377
++
Sbjct: 213 ES 214
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 192 CQCVV*DRVTVPRKHGNGKIRKMSSSVERGSRGEHTNSDRLLCIVEYHYF*CHNATVF*D 371
CQCV V V R+HG R + V + G H S CI F C + D
Sbjct: 738 CQCVS-GYVDVSRQHGRPAGRVCRAVVNECAEGRHDCSSHATCIDTADGFTCRCKDSYRD 796
Query: 372 DN 377
++
Sbjct: 797 ES 798
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 192 CQCVV*DRVTVPRKHGNGKIRKMSSSVERGSRGEHTNSDRLLCIVEYHYF*CHNATVF*D 371
CQCV V V R+HG R + V + G H S CI F C + D
Sbjct: 738 CQCVS-GYVDVSRQHGRPAGRVCRAVVNECAEGRHDCSSHATCIDTADGFTCRCKDSYRD 796
Query: 372 DN 377
++
Sbjct: 797 ES 798
>AF016447-8|AAG24010.1| 189|Caenorhabditis elegans Hypothetical
protein C54F6.5 protein.
Length = 189
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 598 CCQDFYQFYTTICFEFQIL 654
C ++F F+ T CF+FQ++
Sbjct: 97 CAENFTTFFHTCCFDFQVI 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,652
Number of Sequences: 27780
Number of extensions: 315890
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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