Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0146
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 64 2e-11
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 62 7e-11
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 52 7e-08
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 33 0.046
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 0.99
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 1.7
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 27 3.0
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 3.0
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 27 3.0
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 26 4.0
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 5.3
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 7.0
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 7.0
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 9.2
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 9.2
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 25 9.2
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 9.2
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/60 (53%), Positives = 39/60 (65%)
Frame = +2
Query: 77 IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFNP 256
I AH+ L CLA N GT LATAS G +IRVF +GQ+L + RRG+ A IY I F+P
Sbjct: 184 IEAHKDSLACLAFNSDGTMLATASDNGRIIRVFAIPSGQRLYQFRRGSLPAQIYSIAFHP 243
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 247 F*PTSTNLCVTSDHGTVHVFSLED--EKLNKQSTL 345
F P S+ L VTS TVH+F L++ L +Q L
Sbjct: 241 FHPDSSLLTVTSSTQTVHIFRLKEVYSNLERQGLL 275
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 427 ICAFGVDKSSIIVVCADGSYYKYKFNER 510
I AFG D + + V DG+ Y ++ N R
Sbjct: 328 IAAFGPDNTIVNVATYDGNLYSFRVNLR 355
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 62.1 bits (144), Expect = 7e-11
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 RKTGHVQLVEL-SSHAGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFD 178
RK G +Q++ L H S P AH++ + CL ++ G+++A++ST GTLIR+++
Sbjct: 151 RKVGQLQILFLFKDHMNTSIVP------AHDSEISCLGISKTGSKIASSSTNGTLIRIWN 204
Query: 179 TSTGQKLAELRRGAHQATIYCINFNP 256
+ TG+K+ E RRG + + F+P
Sbjct: 205 SETGEKICEFRRGYQHTAVCQLAFSP 230
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 52.0 bits (119), Expect = 7e-08
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +2
Query: 44 AGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAH 223
A TA LI H + + + + G +ATAS KGT+IRV TS G+ + ELRRG
Sbjct: 152 ASLDTAIPVTLIHCHSSAVQVVDFHPRGHLIATASAKGTVIRVITTSDGELVTELRRGYI 211
Query: 224 QATIYCINFNP 256
A+I I+F+P
Sbjct: 212 PASIVSISFHP 222
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 247 F*PTSTNLCVTSDHGTVHVFSL----EDEKLNKQSTLATVNFLPKYFSSN 384
F P L S++GT+HVF + D + S++ + KY +SN
Sbjct: 220 FHPVEPFLACASENGTIHVFKISKQPSDPNSSPTSSVTVSSSWSKYLTSN 269
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 32.7 bits (71), Expect = 0.046
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 74 LIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAEL 208
++ AH P+ ++++ GT ATAS G + R++D +GQ L L
Sbjct: 175 MLPAHSEPIISVSISADGTLCATASYDG-MARIWDVLSGQCLKTL 218
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 14 HVQLVELSSHAGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTL 163
H ++ SH+G S E + HE + C++++ +AT+S+ GT+
Sbjct: 32 HKRIRNYESHSGFS---EYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTI 78
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 0.99
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 77 IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAE 205
+A HE P+ L+ N G+ LA+ S T +R++D + + E
Sbjct: 463 LAGHEGPVSSLSFNSSGSLLASGSWDKT-VRIWDIFSRSGIVE 504
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 83 AHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFNPQV 262
AHE P+ + ++ T LAT +G L++V+D + G + RG H I + F
Sbjct: 101 AHETPVITMTIDPTNTLLATGGAEG-LVKVWDIA-GAYVTHSFRG-HGGVISALCFGKHQ 157
Query: 263 QIFV 274
+V
Sbjct: 158 NTWV 161
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/58 (17%), Positives = 26/58 (44%)
Frame = +2
Query: 77 IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINF 250
+ AH+ P+ CL++N + ++++++TS + R ++ +F
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSF 436
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 253 PTSTNLCVTSDHGTVHVFSLEDEKLNKQSTLATVNFLPKYFSSNWSFCKFT 405
P TN D G +V ED Q+ T + L + SN S+C +
Sbjct: 26 PKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKHHNVSNTSYCNLS 76
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 188 GQKLAELRRGAHQATIYCINFNPQ 259
G +L E HQ+ +YC+ F+PQ
Sbjct: 210 GSQLEEEGFWGHQSNVYCLLFDPQ 233
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 274 VTSDHGTVHVFSLEDEKLNKQSTLATVNFLPKYFSS 381
+ H + SL + + K ST +N +PK FSS
Sbjct: 131 IPDPHNVILELSLNGKVVQKDSTSLMLNKIPKIFSS 166
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 264 KSLCDLRSWNCSCIQF 311
K+ DL+ W CSC QF
Sbjct: 142 KTTIDLKYWYCSCSQF 157
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 95 PLCCLALNVGGTRLATAS--TKGTL-IRVFDTSTGQKLAELRRGAHQATIYCINFNPQ 259
P C+ALN + AT S T+ ++++D + QKL AH I + F+P+
Sbjct: 101 PFTCIALNKKN-QFATGSELTRSLASVQLWDVRSEQKLIRQWNDAHNDDITHLQFHPK 157
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 427 ICAFGVDKSSIIVVCADGSYYK 492
+ +FGV K+ II + + G+YYK
Sbjct: 217 LLSFGVRKAVIITLGSQGAYYK 238
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 289 GTVHVF-SLEDEKLNKQSTLATVNFLPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIV 465
G +H+ LE+EK N Q +A +Y ++ + + CI + K I
Sbjct: 1046 GHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFIT 1105
Query: 466 VC 471
C
Sbjct: 1106 TC 1107
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 86 HEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCI-NFNPQV 262
H AP+ L+ + G LAT T G + ++ T + EL G+ + + + N P+
Sbjct: 474 HTAPVSALSFSHNGRYLATGDTSGG-VCIWSCKTAKLFKEL--GSDNSELIAVTNVLPEE 530
Query: 263 QI 268
Q+
Sbjct: 531 QV 532
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 194 KLAELRRGAHQATIYCINFNP 256
KL L+ AH + C+N++P
Sbjct: 211 KLPFLKLAAHNGVVLCVNYSP 231
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 161 LIRVFDTSTGQKLAELRRGAHQATI 235
L+R+F+ G+K + L G H TI
Sbjct: 949 LLRIFEPILGEKASSLLHGDHTRTI 973
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 265 NLCVTSDHGTVHVFSLEDEKLNKQSTLATVNFLPKY 372
N ++S T H F E EK+ S + +LP +
Sbjct: 151 NSSISSIRFTQHEFEAESEKIIHHSLKGDIEYLPSF 186
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 86 HEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLA 202
H AP+ CLAL+ G + + + ++ +D +TG ++
Sbjct: 231 HTAPVSCLALH-GSEKKVLSGSWDKMVYYWDLNTGDAIS 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,647
Number of Sequences: 5004
Number of extensions: 52189
Number of successful extensions: 121
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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