Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0146
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 74 8e-14
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350... 72 3e-13
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 64 7e-11
07_03_1637 + 28293033-28293779,28294652-28295233,28295650-282958... 55 4e-08
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411... 35 0.063
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 31 0.77
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 29 4.1
09_04_0514 - 18236061-18237392 28 5.4
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 28 5.4
12_01_0181 + 1341829-1343022 27 9.5
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570... 27 9.5
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 27 9.5
01_06_0746 - 31636024-31641396 27 9.5
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +2
Query: 65 ESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCI 244
E+ IAAH++PL C+ + + GT LATAS +GTLIR+F+T G + E+RRG +A IY I
Sbjct: 377 ETRFIAAHDSPLSCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSI 436
Query: 245 NFNPQVQ 265
+P VQ
Sbjct: 437 ALSPNVQ 443
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 328 NKQSTLATVN-FLPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFN 504
N S+L+ + LPKYFSS WSF +F +P I AFG D+ +++++ DGS+Y+Y F
Sbjct: 500 NTSSSLSFMKGILPKYFSSEWSFAQFRLPEITRYIMAFG-DQDTVMMIGLDGSFYRYSF- 557
Query: 505 ERGNAPEMFMISFWRLLKIDK 567
+ N EM + + LK K
Sbjct: 558 DPVNGGEMMLKEYHLFLKASK 578
>01_01_0476 +
3505799-3506479,3506639-3506897,3508427-3508550,
3508922-3509030
Length = 390
Score = 72.1 bits (169), Expect = 3e-13
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = +2
Query: 68 SHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCIN 247
+ +I+AH++ + C+AL + G LATAS KGTLIR+F+T G +L E+RRG +A IY I
Sbjct: 182 TRMISAHDSHISCMALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIA 241
Query: 248 FNPQVQ 265
+P VQ
Sbjct: 242 LSPNVQ 247
Score = 57.6 bits (133), Expect(2) = 4e-11
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +1
Query: 328 NKQSTLATVN-FLPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFN 504
N S+L+ + LPKYFSS WSF +F +P I AFG ++++++V DGS+Y+ F
Sbjct: 304 NASSSLSFMKGILPKYFSSEWSFAQFHLPEVTRYIVAFGA-QNTVMMVGLDGSFYRCSF- 361
Query: 505 ERGNAPEMFMISFWRLLKID 564
++ N +M ++R +K D
Sbjct: 362 DQVNGGQMLQKEYFRFIKAD 381
Score = 27.5 bits (58), Expect(2) = 4e-11
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 268 LCVTSDHGTVHVFSL 312
L V+SD GTVH+FSL
Sbjct: 249 LAVSSDKGTVHIFSL 263
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 64.5 bits (150), Expect = 7e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Frame = +2
Query: 59 APESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIY 238
A ++ I AH + + C AL+ G +ATASTKGTL+R+++ + G L E+RRGA +A IY
Sbjct: 268 ARKTKFINAHTSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIY 327
Query: 239 CINFNPQVQ 265
+ F+ +Q
Sbjct: 328 SLAFSNNLQ 336
Score = 59.3 bits (137), Expect = 3e-09
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Frame = +1
Query: 268 LCVTSDHGTVHVFSLE--------DEKL--------NKQSTLATVN-FLPKYFSSNWSFC 396
L V+SD GT+HVF+L+ D+ L + +L+ + LPKYF S WS
Sbjct: 338 LAVSSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLSFIKGVLPKYFHSEWSVA 397
Query: 397 KFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFNERGNAPEMFMISFWRLLK 558
+F + G I AFG +K+++ VV DGS+Y+ +F + N EM + + LK
Sbjct: 398 QFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQF-DPVNGGEMLQLECYNFLK 450
>07_03_1637 +
28293033-28293779,28294652-28295233,28295650-28295863,
28295894-28295911,28295983-28296118,28296203-28296281
Length = 591
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = +2
Query: 74 LIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFN 253
+I AH + +A++ G +ATAS KGT++RVF + G+ L E++RG +A IY I F+
Sbjct: 400 VIGAHRWRVASVAMSWGAKLVATASVKGTIVRVFRVADGELLQEMKRGFDRADIYSIVFS 459
Query: 254 P 256
P
Sbjct: 460 P 460
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +2
Query: 65 ESHL-IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKL 199
E H+ + AH + L +AL+ G LATA +KGTL+R+F TS G+ L
Sbjct: 202 EDHVYVRAHYSSLAAIALSADGRLLATAGSKGTLVRIFSTSDGKLL 247
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 370 YFSSNWSFCKFTIPNGPPCICAFGV--DKSSIIVVCADGSYYKYKFNERGNAPEMFMISF 543
YF S +F + + + AFG +K+ ++++ DGS+Y+ +F + N EM + +
Sbjct: 527 YFDPERSVAQFHLCDNVKYLVAFGTRPNKNIVLIIGMDGSFYRCQF-DPVNGGEMKQLEY 585
Query: 544 WRLLKI 561
L +
Sbjct: 586 TNFLNM 591
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 247 F*PTSTNLCVTSDHGTVHVFSL 312
F P S L V+SD GTVHVF +
Sbjct: 458 FSPDSEWLAVSSDKGTVHVFHI 479
>11_01_0524 -
4115125-4115491,4116096-4116180,4116796-4116938,
4117449-4117654,4118650-4118748,4118958-4118993,
4119222-4119276,4119505-4119690,4120572-4120759
Length = 454
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 68 SHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCIN 247
S + H +PL CL + +A ST G + + D ++GQKL L+ I C++
Sbjct: 253 SSIYRLHSSPLTCLTIT-DDQLIAAGSTFGN-VAIADQTSGQKLGVLKSAFAPTAIRCLS 310
Query: 248 FN 253
F+
Sbjct: 311 FS 312
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 HLIAAHEAPLCCLALNVG-GTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCIN 247
HL+ H+A + L+L+ TRLA+AS G +++++D L+ L+ QA +Y ++
Sbjct: 369 HLVGKHDADITDLSLSQWMTTRLASASKDG-MVKIWDDRKSVPLSVLKPHDGQA-VYSVS 426
Query: 248 F 250
F
Sbjct: 427 F 427
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 71 HLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINF 250
H H + + G + T + +++V+D + G+ L + + H I CI+F
Sbjct: 234 HTYKGHRGAIRTIRFTPDGRWVVTGG-EDNIVKVWDLTAGKLLHDFK--FHSGQIRCIDF 290
Query: 251 NPQ 259
+PQ
Sbjct: 291 HPQ 293
>09_04_0514 - 18236061-18237392
Length = 443
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 77 IAAHEAPLCCLALNVGG--TRLATASTKGTLIRVFDTSTGQKLAEL 208
+ AH AP+ C+A GG +ATAS GT +V+ G L L
Sbjct: 199 VPAHAAPVTCVACGRGGCDAVVATASMDGT-CKVWTLKDGSHLRTL 243
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 226 GNYILH*F*PTSTNLCVTSDHGTVHVFSLEDEKLNKQ 336
G I+H P N+ VT+++ +V ++ D KLN+Q
Sbjct: 976 GRRIVHELRPGGKNISVTNENKLHYVHAIADYKLNRQ 1012
>12_01_0181 + 1341829-1343022
Length = 397
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 466 VCADGSYYKYKFNERGNAPEMFMISFWRLLKI 561
V DGSY+++ ++ +GN E F S R+L I
Sbjct: 335 VLVDGSYWQFHYDMKGNLLEKFQCS-GRMLNI 365
>05_06_0071 +
25355853-25356095,25356183-25356239,25356848-25357069,
25357143-25357227,25357993-25358083,25358172-25358336,
25358583-25358699,25358773-25358848,25359940-25360102,
25360184-25361064
Length = 699
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 451 SSIIVVCADGSYYKYKFNERGNAPEMFMISFWRLLK 558
SS+ + S + FN R A E F++ +WRLLK
Sbjct: 269 SSVASSLENKSVFHICFNPRSGASE-FIVPYWRLLK 303
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 265 NLCVTSDHGTVHVFSLEDEKLNKQSTLATVNFLPKYFSSN 384
NLC+T+ H + LE EK K A LP+ FSSN
Sbjct: 673 NLCITAAHLPIKDI-LEKEKKEKALAEAENRPLPQSFSSN 711
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 209 RRGAHQATIYCINFNPQVQIFV*PQIMELFMYSV*KMRNSTNSPLWPLL 355
RR + A +N+ +FV PQ++ + ++ + +RN W +L
Sbjct: 424 RRWSFAANTRVLNYLEAAAVFVIPQVLAIVLFIIPWIRNFLEKTNWKIL 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,763
Number of Sequences: 37544
Number of extensions: 311259
Number of successful extensions: 756
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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