Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0146
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1) 101 7e-22
SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 2e-21
SB_7138| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_10694| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 0.54
SB_46201| Best HMM Match : WD40 (HMM E-Value=0) 31 0.60
SB_9056| Best HMM Match : efhand (HMM E-Value=0.074) 30 1.8
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24) 29 3.2
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 29 3.2
SB_1661| Best HMM Match : WD40 (HMM E-Value=5e-13) 29 3.2
SB_15072| Best HMM Match : EGF (HMM E-Value=5.8e-08) 29 4.2
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 28 5.6
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_26158| Best HMM Match : WD40 (HMM E-Value=1.1)
Length = 416
Score = 101 bits (241), Expect = 7e-22
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +1
Query: 259 STNLCVTSDHGTVHVFSLEDEKLNKQSTLATVNFLPKYFSSNWSFCKFTIPNGPPCICAF 438
S LCV+SD GTVH+F+L++ KLNK+S+LA V FL +Y S W FT+P C+CAF
Sbjct: 314 SAFLCVSSDKGTVHIFALKNTKLNKRSSLAKVGFLGQYVESQWGLANFTVPAEVACVCAF 373
Query: 439 GVDKSSIIVVCADGSYYKYKFNERGN 516
G SS+I VC DG+++KY F GN
Sbjct: 374 G-QGSSVIAVCLDGTFHKYVFTPDGN 398
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +2
Query: 2 RKTGHVQLVELSSHAGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDT 181
RK G VQLV+L + P T+ I AH+ L LA+N GT++ATAS KGTLIRVFDT
Sbjct: 229 RKCGSVQLVDLLNRQ-PDTSSAPLTINAHQGELAALAINQQGTQVATASQKGTLIRVFDT 287
Query: 182 STGQKLAELRRGAHQATIYCINFN 253
+ ELRRGA AT+YCINF+
Sbjct: 288 QGRTLVVELRRGADPATLYCINFS 311
>SB_16786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 99.5 bits (237), Expect = 2e-21
Identities = 53/80 (66%), Positives = 60/80 (75%)
Frame = +2
Query: 2 RKTGHVQLVELSSHAGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDT 181
RKTGHVQ+V+L A AP IAAHEAP+ CLA+N+ GTRLATAS KGTLIRVFDT
Sbjct: 102 RKTGHVQIVDL---ANTERAPLE--IAAHEAPMSCLAMNLQGTRLATASEKGTLIRVFDT 156
Query: 182 STGQKLAELRRGAHQATIYC 241
S G +L ELRRG+ A IYC
Sbjct: 157 SNGAQLHELRRGSGSAHIYC 176
Score = 89.0 bits (211), Expect = 3e-18
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +1
Query: 355 NFLPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFNERG 513
+FLPKYFSS WSF +F +P P CICAFG +K+++I +CADGSYYK+ FN +G
Sbjct: 182 SFLPKYFSSKWSFSRFQVPGDPHCICAFGAEKNTVIAICADGSYYKFAFNPKG 234
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 507 KGECTRDVYDQFLETSE 557
KGEC+RD Y QFL+ ++
Sbjct: 233 KGECSRDAYAQFLQMTD 249
>SB_7138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 LIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQ-ATIYCINF 250
+I AH++P+ +A N GT+LATAS KGT+IRVF GQKL E RRG + TI + F
Sbjct: 89 MIPAHDSPVASMAFNHMGTKLATASEKGTVIRVFSIPDGQKLYEFRRGVKRCVTINSLAF 148
Query: 251 N 253
+
Sbjct: 149 S 149
>SB_10694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 74 LIAAHEAPLCCLALNVGGTRLATASTK 154
+I AH++P+ +A N GT+LATAS K
Sbjct: 59 MIPAHDSPVASMAFNHMGTKLATASEK 85
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.3 bits (60), Expect(2) = 0.54
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 38 SHAGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDT 181
+HA P+ +H + AH P+ L + G R+ T S TL +VF T
Sbjct: 3149 THASPTMCSLTHRVRAHHQPVSVLVASEG--RVVTGSHDRTL-KVFRT 3193
Score = 21.8 bits (44), Expect(2) = 0.54
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 164 IRVFDTSTGQKLAELR 211
+RV+D STG+ L LR
Sbjct: 3231 VRVWDLSTGECLQHLR 3246
>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
Length = 292
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 86 HEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCI 244
HE + CLA++ G L T S+ T IR +D T L + H A++ CI
Sbjct: 196 HEGAILCLAVDGKGRLLFTGSSDST-IRSWDLHTYSPLKSFK--GHSASVICI 245
>SB_9056| Best HMM Match : efhand (HMM E-Value=0.074)
Length = 300
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 259 STNLCVTSDHGTVHVFSLED 318
S+ L V SDHGT+HVF L++
Sbjct: 188 SSWLLVGSDHGTIHVFKLQE 207
>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
Length = 1039
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 TNLCVTSDHGTVHVFSLEDEKLN-KQSTLATVNFLPKYFSSNWSFCKF 402
T +C D G LE E N +Q T+ V P Y S W++C +
Sbjct: 925 TRMCRARDPGWDMPVFLEVEIRNARQRTVTAVAVQPNYQSDKWTYCYY 972
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 113 LNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFNPQ 259
LN+ +L + + + V+D G KLA L HQ + C+ FNP+
Sbjct: 443 LNIA-EKLVASGAEDSCAHVWDRHFGVKLATLT--GHQNVVNCVAFNPR 488
>SB_1661| Best HMM Match : WD40 (HMM E-Value=5e-13)
Length = 106
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 56 TAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQ 193
T E ++ H A + A N GT+L T S T + V+DT +G+
Sbjct: 12 TGAEISTLSGHSAEIISCAFNSTGTQLLTGSFDHT-VSVWDTRSGR 56
>SB_15072| Best HMM Match : EGF (HMM E-Value=5.8e-08)
Length = 234
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 364 PKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGS 483
P+Y N C I +GP CIC G SS V D S
Sbjct: 124 PEYPCENGGIC-LAITDGPRCICPIGFSGSSCENVSRDCS 162
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 410 GIVNLQKLQLLEKYLGKKLTVAKVDCLLSFSSSKLN 303
G +NL++L +L+ Y G K D L+++S K N
Sbjct: 1681 GFINLKRLAILDSYYGNGEIRLKKDSLVTWSRPKEN 1716
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = -2
Query: 563 SIFRSLQKLIINISGAFPLSLNLYL**EPSAQTTIIELLST 441
S +S+ +++++S PLS +L E +AQT+ I +++T
Sbjct: 111 SNIQSMSNVLLDVSSTAPLSTSLLAFRETAAQTSHIAIINT 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,134
Number of Sequences: 59808
Number of extensions: 365809
Number of successful extensions: 777
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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