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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0146
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40810.2 68415.m05035 WD-40 repeat protein family similar to ...    73   2e-13
At2g40810.1 68415.m05034 WD-40 repeat protein family similar to ...    73   2e-13
At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4 ...    72   3e-13
At3g62770.2 68416.m07051 transport protein-related weak similari...    63   1e-10
At5g05150.1 68418.m00547 transport protein-related contains 2 WD...    62   4e-10
At4g30510.2 68417.m04332 transport protein-related weak similari...    59   3e-09
At4g30510.1 68417.m04331 transport protein-related weak similari...    59   3e-09
At3g62770.1 68416.m07052 transport protein-related weak similari...    49   3e-06
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    36   0.030
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea...    32   0.28 
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    32   0.37 
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea...    31   0.49 
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ...    31   0.49 
At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to G...    31   0.49 
At5g54730.1 68418.m06815 expressed protein                             29   3.4  
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea...    28   4.5  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    28   6.0  
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    28   6.0  
At2g46290.1 68415.m05758 eukaryotic translation initiation facto...    28   6.0  
At4g25510.1 68417.m03677 hypothetical protein                          27   7.9  

>At2g40810.2 68415.m05035 WD-40 repeat protein family similar to
           Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
           PF00400: WD domain, G-beta repeats
          Length = 393

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/64 (51%), Positives = 45/64 (70%)
 Frame = +2

Query: 74  LIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFN 253
           +I AH++ + C+ L + G  LATASTKGTLIR+F+T  G +L E+RRG  +A IY I  +
Sbjct: 196 IINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALS 255

Query: 254 PQVQ 265
           P VQ
Sbjct: 256 PNVQ 259



 Score = 48.8 bits (111), Expect(2) = 1e-08
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = +1

Query: 361 LPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFNERGNAPEMFMIS 540
           LPKYFSS WS+ +F +        AFG   +++ ++  DGS+Y+  F +  N  EM  + 
Sbjct: 325 LPKYFSSEWSYAQFHVSEVTQFFAAFG-SNNTVAIIGMDGSFYRCSF-DPVNGGEMGQLE 382

Query: 541 FWRLLKID 564
           +   +K+D
Sbjct: 383 YIHFMKMD 390



 Score = 27.9 bits (59), Expect(2) = 1e-08
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 268 LCVTSDHGTVHVFSLEDEKLNKQS 339
           L V+SD GTVH+FSL    + + S
Sbjct: 261 LAVSSDKGTVHIFSLRVRVVGEDS 284


>At2g40810.1 68415.m05034 WD-40 repeat protein family similar to
           Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
           PF00400: WD domain, G-beta repeats
          Length = 393

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/64 (51%), Positives = 45/64 (70%)
 Frame = +2

Query: 74  LIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFN 253
           +I AH++ + C+ L + G  LATASTKGTLIR+F+T  G +L E+RRG  +A IY I  +
Sbjct: 196 IINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALS 255

Query: 254 PQVQ 265
           P VQ
Sbjct: 256 PNVQ 259



 Score = 48.8 bits (111), Expect(2) = 1e-08
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = +1

Query: 361 LPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFNERGNAPEMFMIS 540
           LPKYFSS WS+ +F +        AFG   +++ ++  DGS+Y+  F +  N  EM  + 
Sbjct: 325 LPKYFSSEWSYAQFHVSEVTQFFAAFG-SNNTVAIIGMDGSFYRCSF-DPVNGGEMGQLE 382

Query: 541 FWRLLKID 564
           +   +K+D
Sbjct: 383 YIHFMKMD 390



 Score = 27.9 bits (59), Expect(2) = 1e-08
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 268 LCVTSDHGTVHVFSLEDEKLNKQS 339
           L V+SD GTVH+FSL    + + S
Sbjct: 261 LAVSSDKGTVHIFSLRVRVVGEDS 284


>At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4
           WD-40 repeats (PF00400) (2 weak); PS00778 Histidine acid
           phosphatases active site signature; similar to  Gsa12p
           (GI:18307769) {Pichia pastoris}similar to
           uncharacterized protein JM5 (GP:3114828) [Homo sapiens]
          Length = 391

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 33/64 (51%), Positives = 45/64 (70%)
 Frame = +2

Query: 74  LIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFN 253
           +I AH++ + C+ L + G  LATASTKGTLIR+F+T  G +L E+RRG  +A IY I  +
Sbjct: 200 IINAHDSNIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALS 259

Query: 254 PQVQ 265
           P VQ
Sbjct: 260 PNVQ 263



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 27/68 (39%), Positives = 39/68 (57%)
 Frame = +1

Query: 361 LPKYFSSNWSFCKFTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFNERGNAPEMFMIS 540
           LPKYFSS WSF +F +P       AFG  +++I ++  DGS+Y+  F +  N  EM  + 
Sbjct: 323 LPKYFSSEWSFSQFHVPEVTQYFAAFGA-QNTIAIIGLDGSFYRCNF-DPVNGGEMTQLE 380

Query: 541 FWRLLKID 564
            +  LK D
Sbjct: 381 HFHFLKQD 388


>At3g62770.2 68416.m07051 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 432

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 16/118 (13%)
 Frame = +1

Query: 268 LCVTSDHGTVHVFSL---------EDEKL-------NKQSTLATVNFLPKYFSSNWSFCK 399
           L V+SD GTVHVF L         +  ++       +  S+L+    LP+YFSS WS  +
Sbjct: 316 LAVSSDKGTVHVFGLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKVLPRYFSSEWSVAQ 375

Query: 400 FTIPNGPPCICAFGVDKSSIIVVCADGSYYKYKFNERGNAPEMFMISFWRLLKIDKYF 573
           F +  G   I AFG  K++++++  DGS+Y+ +F +  N  EM  + +   LK    F
Sbjct: 376 FRLVEGTQYIAAFGHQKNTVVILGMDGSFYRCQF-DPVNGGEMSQLEYHNCLKPPSVF 432



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
 Frame = +2

Query: 77  IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAEL--------RRGAHQAT 232
           + AH++ + C AL   G  LATAS+KGTL+R+F+T  G    E         + GA +A 
Sbjct: 244 VMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQESGTSEDEIGKEGADRAE 303

Query: 233 IYCINFNPQVQ 265
           IY + F+   Q
Sbjct: 304 IYSLAFSSNAQ 314


>At5g05150.1 68418.m00547 transport protein-related contains 2 WD-40
           repeats (PF00400); similar to transport protein  Gsa12p
           (GI:18307769) [Pichia pastoris]
          Length = 374

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 28/54 (51%), Positives = 37/54 (68%)
 Frame = +2

Query: 77  IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIY 238
           I AH++ + C+ L + G+ LATASTKGTLIR+F+   G  L E RRG  +A IY
Sbjct: 200 IKAHDSAIACMTLTLDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIY 253



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
 Frame = +1

Query: 268 LCVTSDHGTVHVFSLEDEKLN----KQSTLATVNFLPKY-FSSNWSFCKFTIPNGPPCIC 432
           +  +S+ GT+HVF L  + L+      S+   V  LPKY + +  SF +F++P     I 
Sbjct: 264 VAASSEKGTLHVFRLRPDILSFDPASSSSFIRV-ILPKYLYENERSFAQFSLPASTKFIV 322

Query: 433 AFGVDKSSIIVVCADGSYYKYKFN 504
            FG  ++++++V  DGS+ + KF+
Sbjct: 323 GFG-SENTVLLVGIDGSFRRCKFD 345


>At4g30510.2 68417.m04332 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); similar to several hypothetical
           proteins
          Length = 261

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +2

Query: 65  ESHL-IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYC 241
           +SH  I AH +PL  +AL+  G  +AT S +GTLIRV   S   K    RRG + +TIY 
Sbjct: 130 QSHSEIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYS 189

Query: 242 INFNPQVQI 268
           ++F P  Q+
Sbjct: 190 LSFGPSTQL 198


>At4g30510.1 68417.m04331 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); similar to several hypothetical
           proteins
          Length = 312

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +2

Query: 65  ESHL-IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYC 241
           +SH  I AH +PL  +AL+  G  +AT S +GTLIRV   S   K    RRG + +TIY 
Sbjct: 117 QSHSEIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYS 176

Query: 242 INFNPQVQI 268
           ++F P  Q+
Sbjct: 177 LSFGPSTQL 185


>At3g62770.1 68416.m07052 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 307

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = +2

Query: 77  IAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRR 214
           + AH++ + C AL   G  LATAS+KGTL+R+F+T  G    E+RR
Sbjct: 244 VMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQEVRR 289


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +2

Query: 44  AGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFD----TSTGQKLAELR 211
           A   T+P   +  AH+A L C+  N     L    +    +RVFD    TS G      +
Sbjct: 311 ARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYK 370

Query: 212 RGAHQATIYCINFNP 256
              H+A + C+ ++P
Sbjct: 371 FEGHRAAVLCVQWSP 385



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +2

Query: 47  GPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQ 226
           GPS  P   +   H+  +  +A      +   +    + + ++D  TG   A     AH 
Sbjct: 268 GPSVGPRG-IYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHD 326

Query: 227 ATIYCINFNP 256
           A ++C+++NP
Sbjct: 327 ADLHCVDWNP 336


>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
           family protein similar to C. elegans putative WD-repeat
           protein C14B1.4 (SP:Q17963)
          Length = 333

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +2

Query: 71  HLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINF 250
           H    H + +  LA +       +AS   TL R++D  +  +  ++ RG H   ++C+NF
Sbjct: 79  HRYEGHSSGISDLAWSSDSHYTCSASDDCTL-RIWDARSPYECLKVLRG-HTNFVFCVNF 136

Query: 251 NPQVQIFV 274
           NP   + V
Sbjct: 137 NPPSNLIV 144


>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 268 LCVTSDHGTVHVFSLEDEKLNKQSTLATVNF 360
           LC TS +G V +F +ED K+  + +LA +NF
Sbjct: 561 LCETS-YGLVDIFPIEDRKIGLRESLAEINF 590


>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
           family protein beta-transducin, Schizosaccharomyces
           pombe, EMBL:CAA17803
          Length = 317

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 86  HEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINFNPQVQ 265
           HE  +  +A +     + +AS   TL +++D  TG  +  L    H    +C+NFNPQ  
Sbjct: 70  HENGISDVAFSSDARFIVSASDDKTL-KLWDVETGSLIKTLI--GHTNYAFCVNFNPQSN 126

Query: 266 IFV 274
           + V
Sbjct: 127 MIV 129


>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
           significant) WD-40 repeats (PF0400); identical to WD-40
           repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 507

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +2

Query: 44  AGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFD----TSTGQKLAELR 211
           A   T P + +  AH+A L C+  N     L    +    +R+FD    T+ G      +
Sbjct: 322 ARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYK 381

Query: 212 RGAHQATIYCINFNP 256
              H+A + C+ ++P
Sbjct: 382 FEGHKAAVLCVQWSP 396


>At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to
           GB:AAC49085 GI:862650 from (Arabidopsis thaliana) (Plant
           Cell 7 (8), 1259-1269 (1995))
          Length = 211

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -2

Query: 458 IELLSTPNAQMQGGPFGIVNLQKLQLLEKYLG---KKLTVAKVDCLLSFSSSKLN 303
           IE+L    + M GG  G +NL++L LLEK+L     ++  AK+D +L    S  N
Sbjct: 109 IEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRN 163


>At5g54730.1 68418.m06815 expressed protein
          Length = 763

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
 Frame = +2

Query: 83  AHEAPLCCLALNVGGTRLATASTKGTLIRVF------------DTSTGQKLAELRRGAHQ 226
           AH++P+  L  +  G  L TAS +G  I VF             T+T   L  L+RG   
Sbjct: 345 AHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTISTSRAVKTTTFAHLFRLQRGFTN 404

Query: 227 ATIYCINFNPQVQIFV 274
           A I  I F+    + V
Sbjct: 405 AVIQDICFSKDSNLIV 420


>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
           family protein similar to Transducin beta-like 2 protein
           (WS beta-transducin repeats protein) (WS-betaTRP)
           (Williams-Beuren syndrome chromosome region 13 protein)
           (SP:Q9Y4P3) {Homo sapiens}
          Length = 430

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 376 SSNWSFCKFTIP-NGPPCICAFGVDKSSIIVVC---ADGSYYKY 495
           S ++ F +  +P  G P   AF  D SSI+V C   +  S Y Y
Sbjct: 120 SKSFKFLRINLPAGGHPTAVAFADDASSIVVACHHMSGSSLYMY 163


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
           Pfam PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 125 GTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCI-NF 250
           G  +A  ST G +IRV    T  KLA    G H+ +IYC+ NF
Sbjct: 101 GPLVAFGSTDG-VIRVLSMITW-KLARRYTGGHKGSIYCLMNF 141


>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 86  HEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRRGAHQATIYCINF 250
           H A + CLA +   T +AT S   T + V++           +GAH   +Y + F
Sbjct: 533 HSARINCLAWSPNSTMVATGSL-DTCVIVYEVDKPASSRMTIKGAHLGGVYGLGF 586


>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
           subunit 2, putative / eIF-3 beta, putative / eIF3i,
           putative strong similarity to SP|Q38884 Eukaryotic
           translation initiation factor 3 subunit 2 (eIF-3 beta)
           (eIF3 p36) (eIF3i) (TGF-beta receptor interacting
           protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
           Pfam PF00400: WD domain, G-beta repeat (5
           copies)|19799885|gb|AU231175.1|AU231175
          Length = 355

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 35  SSHAGPSTAPESHLIAAHEAPLCCLALNVGGTRLATASTKGTLIRVFDTSTGQKLAELRR 214
           SSH    T     L+  HE PL  L  N  G  L + + K     V+    G++L   R 
Sbjct: 19  SSHQTLETRMRPILMKGHERPLTFLRYNRNGDLLFSCA-KDHTPTVWFADNGERLGTYR- 76

Query: 215 GAHQATIYCINFN 253
             H   ++C + +
Sbjct: 77  -GHSGAVWCCDIS 88


>At4g25510.1 68417.m03677 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 183 QQDRNWLNCEEELIRQLYTALILTHKYKSLCD--LRSWNCSCIQF 311
           Q+  NW N  ++ I +LY++++L +KY    D   +++   C Q+
Sbjct: 80  QRSENWRNPVDKEIIKLYSSILLGNKYTKADDQCRQNYKSICSQY 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,280,462
Number of Sequences: 28952
Number of extensions: 265772
Number of successful extensions: 702
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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