Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0145
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   2.7  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    26   3.6  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   4.8  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -2

Query: 285 RLSQWAQPLRSHLRSSSLQVVNEVVETP*KTSVYVWILS*TFPSEYVCIRFQRYHCRDQK 106
           RLS   QPL S+ R SS ++ +     P    + V I     PS Y   R   Y   D  
Sbjct: 255 RLSPSTQPLLSNSRHSSFRLASSSTSFPASLEMNVDI--DLEPSGYFFYRHNNYIISDSS 312

Query: 105 QRHEFMHSY 79
              E +  Y
Sbjct: 313 NTREVLRRY 321


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 366 CSMLLTHGRLRRLLCNRRDQLLG 298
           CSM L H R+RRL+  ++  L G
Sbjct: 256 CSMGLLHSRIRRLIYCKKQPLTG 278


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = -1

Query: 172 VLNISLRIC------LHSFSAVSLSRSKTTPRIYA 86
           +LN+SLRIC      LH++   SL RS   P + A
Sbjct: 431 ILNLSLRICFALRFILHNYKDFSLPRSLPRPFLLA 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,886
Number of Sequences: 5004
Number of extensions: 46124
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)