Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0145
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)                 30   1.6  
SB_55958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)                  27   8.7  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                27   8.7  
SB_7174| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 380 RQVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQSFR 493
           R+V    PSVP+    T H +PR V L+     GQ  R
Sbjct: 421 RRVPLTSPSVPSGTTSTDHSQPRRVQLVTMPVPGQMVR 458


>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
          Length = 619

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 251 WDRRG*AHCDRRTVYSPRSWSRRLQSNLRRRPCVRSIEHDHH 376
           W+++G AH    T+  PR +   L+ +L     +R +  +HH
Sbjct: 252 WEKKGVAHAHSTTILQPRVFEAFLKQDLPHPRRLRIVTIEHH 293


>SB_55958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 249 DGIEEAEPIVIDELSIALGAGPDGYRATFEDVHA-SGASNMTITNVRSDLETHQFQLTLY 425
           D I+    IV+DE+  A G G  G   + ED+ + + A         SD E   + LT+ 
Sbjct: 189 DAIDMEFSIVMDEVQFAFGVGLQGKEISMEDIRSLTTAIFWEYPGKLSDTENQHYFLTML 248

Query: 426 GPHISARA-RYRSSGVLLLVRASGGGEYWA 512
               S R   Y+S  +L  VR S   + +A
Sbjct: 249 ICLCSGRQDNYKS--LLSNVRCSTNNKQFA 276


>SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 278 DRRTVYSPRSWSRRLQSNLRRRPCVRSIEHDHH*RQVGPRDPSVPADA 421
           D  T Y   + ++RL++ ++  P    +  +H     GPR P++P DA
Sbjct: 22  DALTTYIITNANKRLETKVQILPLTYGLPDEHD----GPRIPTIPGDA 65


>SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)
          Length = 508

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 435 ISARARYRSSGVLLLVRASGGG-EYWAXTMASRPRG 539
           +S+RA++++    +LV +  G  E+W    A+RP G
Sbjct: 18  LSSRAQWKTQDSAILVSSESGSLEFWCLYGAARPMG 53


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = +2

Query: 284  RTVYSPRSWSRRLQSNLRRRPCVRSIEHDHH*RQVGPRDPSVPADAVRTSHQRPRSVPL- 460
            R+ Y P  W     S+  RR   R   HD +  +  P  P   A+  RT  +  + VP+ 
Sbjct: 1176 RSRYPPSEWGPDADSHYDRRHDDRWDRHDPYVPRDEPHYPREHAEDSRTQQRNVQVVPVE 1235

Query: 461  LRSSAAGQSFRRRRVLGXYHGVKAKG 538
                  G+  R  R++    G    G
Sbjct: 1236 TILDCPGRDIRPDRIVIILRGPPGSG 1261


>SB_7174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 5   LSRELKKKKKHCAPFLFSNFNRLKK*ECINSWRCF*SRQ*YR*KRM 142
           LSREL        P++  N NR+    CI+ + CF   Q YR KR+
Sbjct: 38  LSRELPVFPISATPWVPENVNRVLLYRCISRYSCF--CQYYRSKRI 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,866,233
Number of Sequences: 59808
Number of extensions: 357397
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)