Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0145
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    35   5e-04
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.0  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 267 EPIVIDELSIALGAGPDGYRATFEDVHASGAS-NMTITNVRSDLETHQFQLTLYGPHISA 443
           EP+ +D + I    G    R  ++++   G + N+ I N   D +        Y P +  
Sbjct: 68  EPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDF 127

Query: 444 RARYRSSGVLLLVRASGGGE 503
            A Y+  G +LL+   G G+
Sbjct: 128 VADYKIEGKVLLLPVRGAGK 147



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +2

Query: 557 YERDGRTYLKLQQ 595
           YE++G TYL++++
Sbjct: 166 YEKNGETYLRIKK 178


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 175 DPNVDACLLRSFNNLVDYLKGGAPEMGS 258
           DP +   LL+  N  V    GG P++G+
Sbjct: 88  DPGMFPALLKDPNGNVVARNGGVPQLGN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,853
Number of Sequences: 438
Number of extensions: 3238
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)