Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0144
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   4.1  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   4.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    27   4.1  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   5.4  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   9.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 588 SSGDSIIMSRAQTNKGPLYYIVKSNNFNAANNLEQS 695
           SSGDS  +S + ++KG L  +  S N + ++N E S
Sbjct: 238 SSGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPELS 273


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 345  MLILRLSFIKSRVILRVAMFWSLTWILDVARS*GTLWFRLS 223
            +LI   SFI   + LR+ +    +WI  VA + G+L+F L+
Sbjct: 2003 LLIGISSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 290 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 466
           ++ L     + N  LR  + +I Y   Q  +     L+ + RTS   V T+W L  +M  
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675

Query: 467 YIKVKNLVPKTQ 502
           YI++++    TQ
Sbjct: 676 YIEIESTGQSTQ 687


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 217 NHRKTKP*STS*PRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGY 396
           NH   +P +   P     P     + DP D+ +L    S +   E LI  L N  KS  +
Sbjct: 151 NHFAYEPGTRENPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSF 210


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +1

Query: 253 PRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQ 432
           P +  + S  PE  +P     L+ + +    T+N IP LT   ++YG +    D S V +
Sbjct: 184 PSSSSSFSVPPESLNP----TLSFQHNDVPQTDNFIPFLTPKRQAYGQSSSRADRSSVRR 239

Query: 433 DKVAFTNDNG 462
            +      NG
Sbjct: 240 SQSFKNRRNG 249


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 585 GSSGDSIIMSRAQTNKGPL---YYIVKSNNFNAANNLEQSTILPQTSALNNDASYIIRYA 755
           G+S  + + +   +   PL   Y++ K+N    AN  + S    Q S+ NN +      +
Sbjct: 200 GNSNPAAVPAGFLSGYSPLSYAYFVAKANELALANQRQSSEAAEQPSSKNNTSGANPPSS 259

Query: 756 NKRLMNFSNVP 788
           N + +  + +P
Sbjct: 260 NNQEVTSAPIP 270


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +3

Query: 516 DTVPKIIYVQTDGLQDNQL-YQVAGSSGDSIIMSRAQTN-KGPLYYIVKSNNFNAANNLE 689
           DTV  +  +  D L D    Y    +  D   M   + + K  L   VKS +       E
Sbjct: 321 DTVTMVQSITPDVLTDKTAAYPYFSTCLDKEFMDLIEEHEKNILDAAVKSIDCLTKEGTE 380

Query: 690 QSTILPQTSALNNDASYIIRYANKRLMNFSNVPN 791
           +   L +     ND  YI   +NK + NF+ + N
Sbjct: 381 KLFALMEEIKSVNDNRYITETSNKVMENFTEIKN 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,634
Number of Sequences: 5004
Number of extensions: 63973
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)