Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0144
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.9  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 645 YIVKSNNFNAANNLEQSTILPQTSALNNDASYII--RYANKRLMNFSN 782
           Y   S+    A NL+ S      + +NN  +YI+   Y++K +  +++
Sbjct: 169 YFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYND 216


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 645 YIVKSNNFNAANNLEQSTILPQTSALNNDASYII--RYANKRLMNFSN 782
           Y   S+    A NL+ S      + +NN  +YI+   Y++K +  +++
Sbjct: 169 YFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYND 216


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 363 RY*IFSMLILRLSFIKSRVILRV 295
           +Y +F+M+++ LS + + VIL V
Sbjct: 300 KYLLFTMILVGLSVVITIVILNV 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,301
Number of Sequences: 438
Number of extensions: 4496
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)