Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0144
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ...    30   1.5  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    29   4.7  
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    28   6.2  
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    28   6.2  
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    28   6.2  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   6.2  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    28   6.2  
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ...    28   8.2  
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ...    28   8.2  

>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 706

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 579 VAGSSGDSIIMSRAQTNKGPLYYIVKSNNFNAANNLEQSTILPQTSA 719
           V   S  S ++++ Q NK  +   +K+N  ++  N+EQ ++L Q S+
Sbjct: 514 VLSPSHKSALLNQLQNNKQSMLSPIKTNLMSSPKNVEQHSLLQQASS 560


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -1

Query: 304 LEGRDVLVSDLDSRRCEVMRYFMVSSFYD*VSKIWNVVASTR 179
           +EG  VL +D DS    V + F V    D V+K + +VASTR
Sbjct: 243 MEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTR 284


>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 RNVENPSQRPEHRDPQDYTALNERKSQDKHTENL 357
           + V+  S  PE RDP+ +T L E   +D   EN+
Sbjct: 176 KKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 RNVENPSQRPEHRDPQDYTALNERKSQDKHTENL 357
           + V+  S  PE RDP+ +T L E   +D   EN+
Sbjct: 176 KKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 283 PEHRDPQDYTAL--NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 456
           P+ ++P +   +  NE+K  D      IP   N +  YG+   D +   ++ +K    N 
Sbjct: 39  PKEQNPNNLVPIETNEKKEPDDQNPAFIPQSENGYGLYGHETTDNNNEELNNNKYE-DNV 97

Query: 457 NGNLYQSKESRSENSGT 507
           N +   S  S SE + T
Sbjct: 98  NYDDSFSTPSLSETAQT 114


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 406 DKDESIVSQDKVAFTNDNGNLYQSKESRSENSGT 507
           D+DE     +K      NG++ Q KES SE SG+
Sbjct: 666 DEDEKKDMDEKRGSKKANGSVKQKKESSSEESGS 699


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = +1

Query: 298 PQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQS 477
           P  +   N   +Q + ++N+ P   N H+ Y         S  S     + +   N  ++
Sbjct: 88  PNQHRRYNAPDNQHQRSDNIGPPQPNQHRRYNAPDNQHQRSDNSGPPQPYRHRRNNAPEN 147

Query: 478 KESRSENSG 504
           +  RS+N G
Sbjct: 148 QHQRSDNIG 156


>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631;
          Length = 941

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +1

Query: 262 VENPSQRPEHRDPQDYTALNE------RKSQD--KHTENLIPNLTNSHKSYGYTGIDKDE 417
           + NPS+     +P+ +  L++      +KS D  KHT  ++ N     K   Y G D  E
Sbjct: 10  LRNPSRGVGKSEPETFVCLSKDDERSPKKSSDAKKHTSAVVKNCVEEIKEIIYDGEDTIE 69

Query: 418 SIVSQDKVAFTN 453
           + V +  +  T+
Sbjct: 70  TFVLEQNLGKTS 81


>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 324

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 211 RPNHRKTKP*STS*PRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHK 384
           R +H+K K    S  +  E   +  E  D  D     E   +DK T ++    +N+H+
Sbjct: 169 RASHKKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEEDKSTAHIARKRSNAHE 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,347
Number of Sequences: 28952
Number of extensions: 310572
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)