Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0143
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3S321 Cluster: Putative uncharacterized protein; n=1; ...    38   0.18 
UniRef50_Q8I3P9 Cluster: Putative uncharacterized protein PFE107...    38   0.18 
UniRef50_Q8ILA2 Cluster: Putative uncharacterized protein; n=2; ...    38   0.24 
UniRef50_A0CMR0 Cluster: Chromosome undetermined scaffold_21, wh...    36   1.3  
UniRef50_A2GB05 Cluster: Putative uncharacterized protein; n=2; ...    35   1.7  
UniRef50_Q22G27 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_A7TDR2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q3D6U4 Cluster: Membrane protein, putative; n=8; Strept...    33   6.7  
UniRef50_Q8I491 Cluster: Kinase, putative; n=1; Plasmodium falci...    33   6.7  
UniRef50_Q7RI00 Cluster: Putative zinc finger in N-recognin, put...    33   8.8  
UniRef50_A0CWU2 Cluster: Chromosome undetermined scaffold_3, who...    33   8.8  
UniRef50_Q14241 Cluster: Transcription elongation factor B polyp...    33   8.8  

>UniRef50_A3S321 Cluster: Putative uncharacterized protein; n=1;
           Prochlorococcus marinus str. MIT 9211|Rep: Putative
           uncharacterized protein - Prochlorococcus marinus str.
           MIT 9211
          Length = 623

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 325 RKSQDKHTENLIPNLTNSHKSYGYTGIDKD--ESIVSQDKVAFTNDNGNLYQSKESRSE 495
           + S+  H+ENL    +       + GID+D  ES+ SQ+++  TN++ +L   K+  +E
Sbjct: 550 KTSEGPHSENLSEETSKFSMDASFLGIDQDISESMASQEEITLTNESKDLVDDKDDATE 608


>UniRef50_Q8I3P9 Cluster: Putative uncharacterized protein PFE1070c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFE1070c - Plasmodium falciparum (isolate 3D7)
          Length = 1345

 Score = 38.3 bits (85), Expect = 0.18
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 307 YTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK 438
           Y  LN +K  D+ T  L P++   HKSY Y    +D+ ++  DK
Sbjct: 209 YLKLNNKKDIDEKTNYLFPSIDIDHKSYSYLEQGQDDYLIEMDK 252


>UniRef50_Q8ILA2 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2269

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 301  QDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG--NLYQ 474
            +D+  L+   S+DK+ EN + N    +K   Y  ++K+E      +    N     N+YQ
Sbjct: 1373 EDFNKLDNEHSKDKYGENALINYVYLNKGNVYKNVEKNEKNKKNKERTHVNTEIKLNIYQ 1432

Query: 475  SKESRSENS 501
             KES   NS
Sbjct: 1433 RKESSDSNS 1441


>UniRef50_A0CMR0 Cluster: Chromosome undetermined scaffold_21, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_21,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 717

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 265 ENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKS 387
           +NP Q   H DP  ++ LN  K  + H    +P+LTNS +S
Sbjct: 441 QNPLQNYLHLDPLIFSTLNLLKKMNNHDNYKLPSLTNSEQS 481


>UniRef50_A2GB05 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 509

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = +1

Query: 193 QHSRSWRPNHRKTKP*STS*PRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLT 372
           +HS S   NH++ K      P+  E P ++PE ++P+     +E+KS  K  E   P   
Sbjct: 382 KHSHS--SNHKQPKKEEEK-PKEKETP-KKPEKKEPKKEEKKDEKKSPKKKQEKPSPAKP 437

Query: 373 NS-HKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSK 480
               + Y Y   D+DE  V Q+   + +++GN+ + +
Sbjct: 438 KPVVEEYYYYYSDEDEPPV-QNVTIYVDEDGNIIEGE 473


>UniRef50_Q22G27 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 769

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 22/70 (31%), Positives = 39/70 (55%)
 Frame = +1

Query: 292 RDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLY 471
           ++PQ+Y +LN  KS D+   +L+ N  NS+       ++K  SI+   + +   +N N+ 
Sbjct: 673 KNPQNYGSLN--KSSDRLYNSLL-NKNNSNDYVLQNSLNKKNSILLSGQNSQNINNNNIN 729

Query: 472 QSKESRSENS 501
            SKES ++ S
Sbjct: 730 MSKESLNKQS 739


>UniRef50_A7TDR2 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 725

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
 Frame = +1

Query: 259 NVENPSQRPEHRDPQDYTALNERKSQD-----KHTENLIPNLTNSHKSYGYT---GIDKD 414
           N   PS R   R PQ  ++L ER+S D      +  N   ++T+ HK         + K 
Sbjct: 630 NTSRPS-RSRSRSPQRNSSLPERRSLDLAPVSSYNPNTSRSITDMHKKNQKVTSGSLRKV 688

Query: 415 ESIVSQDKVAFTNDNGNLYQSKESRSENS 501
           +S  + DKV     NG+   SK+S+ ++S
Sbjct: 689 KSTSNMDKVKTEYSNGSKSTSKKSKKKSS 717


>UniRef50_Q3D6U4 Cluster: Membrane protein, putative; n=8;
           Streptococcus agalactiae|Rep: Membrane protein, putative
           - Streptococcus agalactiae COH1
          Length = 265

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 435 VLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILR-LSFIKSRVILRVAMFWSLTWIL 265
           +L NN   + +TS  IG  TI    Y I  ++I++ LS  KS+++LR+       W+L
Sbjct: 93  LLVNNIWTVFFTSNLIGLSTIIIFAYCILLVIIIKILSKNKSKLLLRITFGIHAGWLL 150


>UniRef50_Q8I491 Cluster: Kinase, putative; n=1; Plasmodium
           falciparum 3D7|Rep: Kinase, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 600

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 319 NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSEN 498
           N RK   K  EN   +L NS+K++   G+D     V    +   +DN  +    E  +EN
Sbjct: 122 NNRKISIKKHENKDESLENSNKNFELNGVDLYHGNVELKNIKNLDDNDKMDLKHEYNNEN 181

Query: 499 SG 504
            G
Sbjct: 182 VG 183


>UniRef50_Q7RI00 Cluster: Putative zinc finger in N-recognin,
            putative; n=1; Plasmodium yoelii yoelii|Rep: Putative
            zinc finger in N-recognin, putative - Plasmodium yoelii
            yoelii
          Length = 3053

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256  RNVENPSQRPEHRDPQD-YTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQ 432
            +N +N       ++ Q+   + N + SQ+        N  NS  S   +   ++ ++V+ 
Sbjct: 1455 QNSQNSQNSQNSQNSQNSQNSQNSQNSQNSQNSQNSQNSQNSQNSQNNSNHGENNTLVTT 1514

Query: 433  DKVAFTNDNGNLYQSKESRSENS 501
              V  + +NGN    +ESR  NS
Sbjct: 1515 SNVETSQENGNSRGIEESRDGNS 1537


>UniRef50_A0CWU2 Cluster: Chromosome undetermined scaffold_3, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_3,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 950

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = +1

Query: 262 VENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKV 441
           +  P ++ E    Q ++  N+   Q    +NLI    N          DK E  +++ K+
Sbjct: 29  LSTPQEQIEIFTSQQFSKKNDELRQQLDQQNLIITQYNQQLQLTQLNYDKKEEELNKLKI 88

Query: 442 AFTNDNGNLYQSKESRSEN 498
              N NG L+Q ++  + N
Sbjct: 89  NLQNVNGQLFQLQKQSTVN 107


>UniRef50_Q14241 Cluster: Transcription elongation factor B
           polypeptide 3; n=23; Euteleostomi|Rep: Transcription
           elongation factor B polypeptide 3 - Homo sapiens (Human)
          Length = 772

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
 Frame = +1

Query: 184 WKLQHSRSWRPNHRKTKP*STS---*PRNVENPSQRPEHR---DPQDYTALNERKSQDKH 345
           WK   SRS+ P+HR+ K    S    P  V +  +R + R        T  ++ +S D  
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYG 175

Query: 346 TENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 495
                P+ T+ H+ Y   Y  +++D E IVS  K      + N +Q +   S+
Sbjct: 176 HVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,118,402
Number of Sequences: 1657284
Number of extensions: 12576156
Number of successful extensions: 32251
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32218
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)