Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0143
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127...    29   2.7  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    29   3.5  
01_06_1792 - 39912714-39913559                                         29   4.7  

>12_01_0171 -
           1268803-1269500,1271491-1271567,1271941-1272065,
           1272146-1272234,1272851-1272936,1273509-1273765
          Length = 443

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 292 RDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 456
           ++PQ   AL+E    D  +EN +  L++S  +   T  D +E + + D     N+
Sbjct: 264 QEPQVVPALHEEPQDDDRSENAVQELSSSEAN---TSSDNNEPLAADDSAECMNE 315


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 193 QHSRSWRPNHRKTKP*STS*PRNVENPSQRPEHRDPQDYTALNERKSQDKH 345
           +HS+   P H + +  S+       +   R  HRD   Y   +E +S  +H
Sbjct: 762 RHSKDLEPRHHRHRDSSSEDEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRH 812


>01_06_1792 - 39912714-39913559
          Length = 281

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 25/88 (28%), Positives = 42/88 (47%)
 Frame = +1

Query: 241 STS*PRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDES 420
           S+S PR   +  +  + +D Q YT+ N     D   +     +T+SHK   +   +KD +
Sbjct: 28  SSSPPRGAGDKKET-KTKDYQSYTSNNNNNGSDDDKDKNKHKITSSHK---HKDDEKDRN 83

Query: 421 IVSQDKVAFTNDNGNLYQSKESRSENSG 504
             S+D  +    N + Y +K+S   NSG
Sbjct: 84  NHSKD--SHGGGNSSNY-NKDSYGGNSG 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,388,858
Number of Sequences: 37544
Number of extensions: 319485
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)