Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0143
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L47345-1|AAA75492.1|  772|Homo sapiens elongin A protein.              33   1.3  
BC002883-1|AAH02883.1|  772|Homo sapiens transcription elongatio...    33   1.3  
AL031295-2|CAB40157.1|  772|Homo sapiens transcription elongatio...    33   1.3  
BC037386-1|AAH37386.1|  494|Homo sapiens PARP8 protein protein.        31   3.9  

>L47345-1|AAA75492.1|  772|Homo sapiens elongin A protein.
          Length = 772

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
 Frame = +1

Query: 184 WKLQHSRSWRPNHRKTKP*STS---*PRNVENPSQRPEHR---DPQDYTALNERKSQDKH 345
           WK   SRS+ P+HR+ K    S    P  V +  +R + R        T  ++ +S D  
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYG 175

Query: 346 TENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 495
                P+ T+ H+ Y   Y  +++D E IVS  K      + N +Q +   S+
Sbjct: 176 HVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226


>BC002883-1|AAH02883.1|  772|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 3 (110kDa, elongin A)
           protein.
          Length = 772

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
 Frame = +1

Query: 184 WKLQHSRSWRPNHRKTKP*STS---*PRNVENPSQRPEHR---DPQDYTALNERKSQDKH 345
           WK   SRS+ P+HR+ K    S    P  V +  +R + R        T  ++ +S D  
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYG 175

Query: 346 TENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 495
                P+ T+ H+ Y   Y  +++D E IVS  K      + N +Q +   S+
Sbjct: 176 HVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226


>AL031295-2|CAB40157.1|  772|Homo sapiens transcription elongation
           factor B (SIII), polypeptide 3 (110kDa, elongin A)
           protein.
          Length = 772

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
 Frame = +1

Query: 184 WKLQHSRSWRPNHRKTKP*STS---*PRNVENPSQRPEHR---DPQDYTALNERKSQDKH 345
           WK   SRS+ P+HR+ K    S    P  V +  +R + R        T  ++ +S D  
Sbjct: 116 WKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRDERKRCHRMSPTYSSDPESSDYG 175

Query: 346 TENLIPNLTNSHKSY--GYTGIDKD-ESIVSQDKVAFTNDNGNLYQSKESRSE 495
                P+ T+ H+ Y   Y  +++D E IVS  K      + N +Q +   S+
Sbjct: 176 HVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPG--KGHSNAFQDRLGASQ 226


>BC037386-1|AAH37386.1|  494|Homo sapiens PARP8 protein protein.
          Length = 494

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 11/36 (30%), Positives = 26/36 (72%)
 Frame = +1

Query: 385 SYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRS 492
           S+GY+G++K + + ++D+ A ++ + N  QS++ R+
Sbjct: 451 SFGYSGMNKKQKVSAKDEPASSSKSSNTSQSQKKRT 486


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,964,280
Number of Sequences: 237096
Number of extensions: 1865266
Number of successful extensions: 7086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7086
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)