Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0142
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    86   6e-18
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    29   0.92 
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   8.6  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.6  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 36/72 (50%), Positives = 49/72 (68%)
 Frame = +2

Query: 308 RTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHR 487
           +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL   L      AF+ ++  W+RDHR
Sbjct: 89  KTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHR 148

Query: 488 MHHKYSEPMRTP 523
            HH+Y++  + P
Sbjct: 149 AHHRYTDTDKDP 160



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 20/61 (32%), Positives = 40/61 (65%)
 Frame = +1

Query: 511 DADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMPLAC 690
           D DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++   +P+A 
Sbjct: 157 DKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHF---LPIAS 210

Query: 691 F 693
           F
Sbjct: 211 F 211


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 247 SLFACRWCLWRVLVPFQSHVEDFYIRH 327
           +LF CR CL  +  P +S +E++ ++H
Sbjct: 101 TLFKCRVCLTNIGQPERSRIENYVLKH 127


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 114 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 236
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 272 KHHRHANKEQNHISPHNLPRS 210
           +HHRH    Q   S H++PR+
Sbjct: 317 QHHRHPFARQPDYSAHSIPRT 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,501,078
Number of Sequences: 5004
Number of extensions: 80707
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)