Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0142
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.56 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.56 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.3  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 159 NNLPEDAPPHVPPSAEKRPWKIVWRNVILFFI---CMSVVFME 278
           N+ PE+  P  P    +R   +++ ++  FFI    MS+V++E
Sbjct: 176 NDWPEELEPGTPCQLTRRQGYVIYSSLGSFFIPLLLMSLVYLE 218


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 159 NNLPEDAPPHVPPSAEKRPWKIVWRNVILFFI---CMSVVFME 278
           N+ PE+  P  P    +R   +++ ++  FFI    MS+V++E
Sbjct: 176 NDWPEELEPGTPCQLTRRQGYVIYSSLGSFFIPLLLMSLVYLE 218


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 159 NNLPEDAPPHVPPSAEKRPWKIVWRNVILFFI---CMSVVFME 278
           N+ PE+  P  P    +R   +++ ++  FFI    MS+V++E
Sbjct: 176 NDWPEELEPGTPCQLTRRQGYVIYSSLGSFFIPLLLMSLVYLE 218


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 246  TESHFSTQSSKVSSLLREVHGAVHLLAGYWRRLRTIPTKPPVSFGEAF 103
            +E H    S  + S +   +  +   A  WR+ +  P  PP S G+A+
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERTA--WRQQQPPPPPPPPSSGQAY 1368


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 582 MLPQQQPANVGKEES 538
           +LP  +PANV KE+S
Sbjct: 768 LLPVIKPANVNKEQS 782


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 153 DANNLPEDAPPHVPPSA 203
           D++  P+ APP  PPS+
Sbjct: 334 DSDTPPKPAPPPPPPSS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,007
Number of Sequences: 438
Number of extensions: 6488
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)