Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0140
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 31 0.22
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 29 0.88
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 3.6
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 4.7
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 4.7
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 4.7
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 6.2
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 8.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 8.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 8.2
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 255 HQEVVAEEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDRVKLLNISAIEAERL 434
HQ+V AE + E KR+ A + E K+ E ++EG+ ++K +N + EA+ +
Sbjct: 206 HQQVSAERQKRAEILESEGKRQAAINVAEGDKQAEILDSEGQ---KIKTINSALAEAQAI 262
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 28.7 bits (61), Expect = 0.88
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 590 LHRMLHHTFA-FVSHTVPYPLVACFS-LTFVLSYCGMFIRREP 468
L + H+ F F+ H PY +CFS L L +CG+++ ++P
Sbjct: 384 LRQFFHNEFPRFLPHAYPY-YASCFSVLGAFLLFCGIWLLQKP 425
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.5
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +1
Query: 91 VRKQKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNTKKS* 270
+++++E+KQ ++ QK E+ ++ KE+ EK+ ++ Q+ + AR Q ++
Sbjct: 646 LKREQEKKQ--QELERQKREEKQKQKER---EKKLKKQQQEAD---REKMAREQRLREEE 697
Query: 271 QKRLGTSYQRTMKLNGARQSG**RIRRN--EKKQKQKAKTTIESNC*IFLR*KQS 429
+KR+ +R KL+ + R RR EK+ ++K + E+ F Q+
Sbjct: 698 EKRILEERKRREKLDKEEEE---RRRRELLEKESEEKERRLREAKIAAFFAPNQT 749
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = +1
Query: 88 FVRKQKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNTKKS 267
F R+ E+K+ + Q+ + +E ++K +EK+ + +R+R + +++ Q K
Sbjct: 113 FNRELLEKKRI--EAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQ 170
Query: 268 *Q 273
Q
Sbjct: 171 EQ 172
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 291 LPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDR 392
L T Y +R Q W+ ED+KK++E + + Y++
Sbjct: 149 LSTQYSIQRSQ--WVREDEKKKKEIQDLKELYEK 180
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 112 KQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNTKKS*Q 273
K+ T+K+ +K +NK K + K R+++L T +E Q K+ Q
Sbjct: 449 KRETHKILLEKISKNKRLKFELNDRKSHASQMRMKSLATLASEQPIQKRKRKDQ 502
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 DTKHQEVVA-EEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGK 380
D K+Q A +E +LP +E K ++ E +DQK+ E + +GK
Sbjct: 37 DIKYQPKGAMKEVIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGK 82
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 708 MNSSPRVFSSLCNLTFQIINHLSTASL*SSCIPCMMTL 595
+ S PR+ ++ NLT + N+L +A L SS I ++ +
Sbjct: 84 VTSPPRIIAASANLTTEQTNYLVSAGLISSGIMTLIQI 121
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 22 VNKYIQLNNISNILSV*SM*VIFVRKQKERKQFT----YKMNTQKCEQNKEAKEKTFVEK 189
VN ++L+N + L S ++ + K K+ + + Q+CE E KT VEK
Sbjct: 1058 VNSQLELHNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYDRQECEYLAEIVFKTLVEK 1117
Query: 190 QAE 198
+ E
Sbjct: 1118 ERE 1120
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 539 MERYEKQKQKYGEAFYGGPNVIIHGMHEDHKEAVDKWLMIWKVRLQRELNTRGDEF 706
+ R E+ +KYG P+ +++ +ED + D + +W L+R + +G+ F
Sbjct: 51 IRRVERLGKKYGAIKVVRPSSVLNPWNEDTMKPSDVKMDLW---LERMVRRKGEYF 103
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +3
Query: 339 EDQKKREEAETEGKNYDRVKLLN-ISAIEAERLERXXXXXNPDQ-----GFSTYEHATIR 500
ED+ +++E E + YD + LLN A++ + +E+ D GFS Y+ ++
Sbjct: 457 EDEIEQDEIERVLQKYDNIPLLNEEQALKEKNVEKDFIQWKDDYYRSKVGFSYYDEEALK 516
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 567 FCFCFSYRSISAGGMFFTNLCIVVLWHVHTSRTLGLGSFSFFYVRVALLLSQKYSTI 397
F FCF + +G + F L + +++ + L L FS + V + LLS KY T+
Sbjct: 796 FFFCFLHTVEPSGKLTF-ELAFLEIFYELFNCLLHL-QFSKYLVIIGTLLSDKYMTL 850
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,727
Number of Sequences: 5004
Number of extensions: 56424
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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