Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0140
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    31   0.92 
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   2.8  
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846...    29   3.7  
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580...    28   6.5  
03_06_0155 - 32031370-32031707,32033066-32033279                       28   6.5  
11_01_0237 + 1822218-1822252,1823164-1824145,1824261-1824893           28   8.6  
05_01_0328 - 2571155-2571627,2571894-2572197                           28   8.6  
01_01_0755 - 5827893-5829764                                           28   8.6  

>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 88   FVRKQKERKQFTYKM-NTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNTKK 264
            F R +KER + T ++ +++K E++   K   ++  + +R+QRLR       EAR Q  ++
Sbjct: 806  FSRLKKERDERTSQLISSRKRERDTVRKLMYYLNLEEQRLQRLRE----EEEARKQEERR 861

Query: 265  S*QKRLGTSYQRTMKLNGARQSG**RIRRNEKKQKQK 375
               KR  T  +  +    A+Q    R    EKK+KQ+
Sbjct: 862  ---KREETERKAKLDAIAAKQLQRER-ELEEKKEKQR 894


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 551 EKQKQKYGEAFYGGPNVIIHGMHEDHKEAVDKWL 652
           +K+    GEAF  GP+++  G++E+ +++V  +L
Sbjct: 709 DKETYNNGEAFMVGPSLLAQGIYEEGQKSVSVYL 742


>09_04_0676 -
           19383757-19383890,19384308-19384415,19384493-19384679,
           19384937-19385143
          Length = 211

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 260 LVFCVLASFRAVCKLRSLCMRSACFSTNV 174
           LV C+LA  R    +R +  R  CFS NV
Sbjct: 11  LVLCILAFLRPAAAIRFVIDREECFSHNV 39


>03_06_0427 -
           33857008-33857137,33857224-33857258,33857966-33858046,
           33858213-33858338,33858410-33858568,33858797-33858934,
           33859084-33859155,33859359-33860273
          Length = 551

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/42 (26%), Positives = 29/42 (69%)
 Frame = +1

Query: 85  IFVRKQKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQR 210
           + + ++  RK+FT+ + T++ ++ +EA+   F+ ++AE+ +R
Sbjct: 423 LIIPRESFRKEFTHAIETKQVDE-QEAQRAKFIVEKAEQHKR 463


>03_06_0155 - 32031370-32031707,32033066-32033279
          Length = 183

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 306 EAKRRQAEWLVEDQKKREEAETEGKNYDRVKLLNISAIEAE 428
           E ++   E L+E+ K+REE  T+ +    VKLL    + ++
Sbjct: 88  ETEKSFTELLIEELKQREEEATQAQQQADVKLLEAKKLASQ 128


>11_01_0237 + 1822218-1822252,1823164-1824145,1824261-1824893
          Length = 549

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 589 RPQRHHTWNARRS*RGSRQMVDDLEGQIAKRTKYSRRRIHNDD 717
           RP+ +  W AR    G RQ    +EG + +  +   RR H+++
Sbjct: 476 RPETYRRWQARNRRAGLRQAA--VEGDVVEAVRRRVRRRHHEE 516


>05_01_0328 - 2571155-2571627,2571894-2572197
          Length = 258

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 583 LW-RPQRHHTWNARRS*RGSRQMVDDLEGQIAKRTKYSRR 699
           LW R  R  +W  + + +G+R   +D+ G  A+R   SRR
Sbjct: 3   LWNRSSRRRSWAVQTTRKGARGAAEDVRGS-ARRASVSRR 41


>01_01_0755 - 5827893-5829764
          Length = 623

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 1   QIYYTHGVNKYIQLNNISNI 60
           + +YT+  N+YI+ NN+SN+
Sbjct: 277 EFWYTNPPNEYIEANNLSNV 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,169
Number of Sequences: 37544
Number of extensions: 331953
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)