Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0138
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) ...    34   0.082
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    33   0.25 
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    33   0.25 
At1g03850.2 68414.m00367 glutaredoxin family protein contains IN...    31   0.77 
At1g03850.1 68414.m00366 glutaredoxin family protein contains IN...    31   0.77 
At3g52130.1 68416.m05722 protease inhibitor/seed storage/lipid t...    27   9.5  

>At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 2)
           identical to SP|Q9T0P4 Ferredoxin-dependent glutamate
           synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT
           2) {Arabidopsis thaliana}
          Length = 1629

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 434 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 258
           A+   H  L++ G+  SAS+      C    + AC +G   A ++C H++L   R WR++
Sbjct: 733 AVGAVHQHLIQNGLRMSASIIADTAQCFSTHHFACLIG-YGASAICPHLALETCRQWRLS 791

Query: 257 SQ 252
           ++
Sbjct: 792 NK 793


>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 434 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 258
           A+   H  L++ G+  SAS+      C    + AC VG   A +VC +++L   R WR++
Sbjct: 757 AVGAVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLS 815

Query: 257 SQ 252
           ++
Sbjct: 816 NK 817


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 434 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVG*ANAESVC-HVSLYHLRNWRIN 258
           A+   H  L++ G+  SAS+      C    + AC VG   A +VC +++L   R WR++
Sbjct: 731 AVGAVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLS 789

Query: 257 SQ 252
           ++
Sbjct: 790 NK 791


>At1g03850.2 68414.m00367 glutaredoxin family protein contains
           INTERPRO Domain IPR002109, Glutaredoxin
           (thioltransferase)
          Length = 150

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 261 KQSGARSSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPVLGNIGSRESTNR 82
           K +   + R +N  ++   +  F  +RR CC G + +RL     + PV+  IG  ++ N 
Sbjct: 46  KPTSISNKRSSNLVVMENAVVVF--ARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDNNNY 103

Query: 81  QN 76
            N
Sbjct: 104 DN 105


>At1g03850.1 68414.m00366 glutaredoxin family protein contains
           INTERPRO Domain IPR002109, Glutaredoxin
           (thioltransferase)
          Length = 159

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 261 KQSGARSSRGANYGLISRCLCHFCGSRRFCCFGSLCRRLSGICYLEPVLGNIGSRESTNR 82
           K +   + R +N  ++   +  F  +RR CC G + +RL     + PV+  IG  ++ N 
Sbjct: 46  KPTSISNKRSSNLVVMENAVVVF--ARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDNNNY 103

Query: 81  QN 76
            N
Sbjct: 104 DN 105


>At3g52130.1 68416.m05722 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           cysteine-rich 5B protein - Lycopersicon esculentum,
           PIR2:S39552 [GI:415833]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 125

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 319 QPTPHALLPKT-IQKCTRTFTDALA-LIPTRSS 411
           QP P  +LP+  +  C+RTF  AL  LIP R++
Sbjct: 33  QPPPPPMLPEEEVGGCSRTFFSALVQLIPCRAA 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,537
Number of Sequences: 28952
Number of extensions: 214646
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)