Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0137
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    25   8.2  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.2  

>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 227 KTLQKSILFKAGNQGEYKYCYDQN 156
           K  Q  + F    +GEY++C+D +
Sbjct: 77  KRRQADVFFTLEEKGEYEFCFDNH 100


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 552 MFASFNFTLRPILLFIFQINFAKHI*PNF*I*NVLNVGYY 433
           M   F   LR   L+   +NF K   P   + N +N+GYY
Sbjct: 44  MLNEFRCILRLPGLYKLIVNFRKDSSPETYMSNAINIGYY 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,629
Number of Sequences: 5004
Number of extensions: 51146
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)