Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0135
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   3.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.8  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   6.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   6.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   6.3  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 246 IDLTSMSRWYTALLRPGGPYCWYRA 172
           + L  +  WYT  L P  PY ++ A
Sbjct: 11  LGLNGLIDWYTVCLVPLNPYQFFLA 35


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 133 VAPSTPTSGAWFRRPI 180
           +APST  S  +FR+P+
Sbjct: 254 LAPSTEVSAPFFRQPL 269


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 214 GVPTGHGREVYGQFTSLKTSPQTQFESH 297
           G P   GR+ Y +F +L+   +  F  +
Sbjct: 3   GCPRRRGRQTYTRFQTLELEKEFHFNHY 30


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 214 GVPTGHGREVYGQFTSLKTSPQTQFESH 297
           G P   GR+ Y +F +L+   +  F  +
Sbjct: 154 GCPRRRGRQTYTRFQTLELEKEFHFNHY 181


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 214 GVPTGHGREVYGQFTSLKTSPQTQFESH 297
           G P   GR+ Y +F +L+   +  F  +
Sbjct: 213 GCPRRRGRQTYTRFQTLELEKEFHFNHY 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,777
Number of Sequences: 336
Number of extensions: 3789
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)