Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0135
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.32 
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    29   0.99 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.3  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   7.0  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   7.0  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   7.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   9.2  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = +1

Query: 82  PTKDATEPPSQIAGDVGVAPSTPTSGAWFRRPIPAVRTSGTKKRGVPTGHGREVYGQFTS 261
           P      P S  +  + + P++ +S      P+P   TS T    +PTG    +    T 
Sbjct: 190 PITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPIT- 248

Query: 262 LKTSPQTQFESHSRP 306
             T P T   S S P
Sbjct: 249 -PTVPPTSTSSTSIP 262


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 101 NHQARSQEMLASPHRPQPQALGSDALYQQYGPPGRRSAVYQRDMD 235
           N  + S  ML SP  P      S   Y  Y PP  +S+V +RDMD
Sbjct: 678 NTASSSSLMLDSPVTPSSPYSTSQG-YSFYRPPKPKSSVRKRDMD 721


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 555  AQGRSSFEDRIRTSGRSI-ESQRIHENVYRRTPDSHNRRTP--DSVGPKREDTLTT 713
            A+   S+ +R + S  S  ESQ  H N Y  T D+  R+T   D  G + + T TT
Sbjct: 928  AERAHSYSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTSTT 983


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 181  PAVRTSGTKKRGVPTGHGREVYGQFTSLKTSPQTQFESHSRPDLRSPQQL 330
            P +R + +   GV   HG E+Y +  S  ++    F+    PD R  +Q+
Sbjct: 923  PEIRQAASYGIGVAAQHGGELYAEICS--SALPALFKMLELPDARDEEQI 970


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 187 VRTSGTKKRGVPTGHG 234
           +R +G+KKR +PTG+G
Sbjct: 211 LRPAGSKKRVIPTGYG 226


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 2   QYSHGVANNMAYPSPSPH 55
           +Y HG ++++  P PSPH
Sbjct: 87  EYHHGRSHSLVSPPPSPH 104


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 418 PEASTPYSHDRSRRNSHAN 474
           P A  P+S +R RR++H N
Sbjct: 138 PNAHAPHSQNRRRRSNHLN 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,841
Number of Sequences: 5004
Number of extensions: 63157
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)